Gene detail

Detailed information of OS493_038974-T1 in Lophelia pertusa

Genomic Location: scaffold_830:431...5561
NR annotation: KAJ7381793.1, hypothetical protein OS493_038974, partial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q93379	Glutathione reductase, mitochondrial OS=Caenorhabditis elegans OX=6239 GN=gsr-1 PE=1 SV=2
Q6FRV2	Glutathione reductase OS=Candida glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138) OX=284593 GN=GLR1 PE=3 SV=1
Q6C5H4	Glutathione reductase OS=Yarrowia lipolytica (strain CLIB 122 / E 150) OX=284591 GN=GLR1 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004738 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07992 all species →	Pyr_redox_2	Pyridine nucleotide-disulphide oxidoreductase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036188 all species →	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan
IPR046952 all species →	Family	Glutathione reductase/thioredoxin reductase-like	Interproscan
IPR023753 all species →	Domain	FAD/NAD(P)-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42737 all species →	GLUTATHIONE REDUCTASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004362 all species →	Molecular Function	glutathione-disulfide reductase (NADPH) activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006749 all species →	Biological Process	glutathione metabolic process	Interproscan
GO:0034599 all species →	Biological Process	cellular response to oxidative stress	Interproscan
GO:0045454 all species →	Biological Process	cell redox homeostasis	Interproscan
GO:0050660 all species →	Molecular Function	flavin adenine dinucleotide binding	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00383	GSR, gor; glutathione reductase (NADPH)	EC:1.8.1.7	Diabetic cardiomyopathy	ko05415	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_038974-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

105TPM > 0

7Conditions

38.9Max TPM

9.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	16	5.86	14.94
polyp at pH7 6	18	17	7.32	15.06
coral polyp · control treatment	16	16	11.69	27.80
coral polyp · oil and dispersant treatment	16	15	15.33	38.87
coral polyp · oil treatment	16	16	10.60	19.82
coral polyp · dispersant treatment	16	16	11.06	22.09
Polyp	10	9	6.01	13.67

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.94
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.43
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.38
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.57
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.35
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.09
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.91
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.50
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.10
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.33
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.21
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.13
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.07
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.06
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.76
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.72
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.06
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.99
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.73
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.73
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.12
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.73
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.49
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.80
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.72
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.86
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.23
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.24
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.66
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.58
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.86
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.62
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.31
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.80
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.66
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.73
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.95
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.57
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.00
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.38
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.10
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.07
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.20
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.14
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.93
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.02
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.33
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.29
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.91
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.87
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.68
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.68
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.24
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.15
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.56
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.10
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.01
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.99
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.83
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.80
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.30
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.34
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.29
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.39
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.82
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.63
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.04
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.00
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.99
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.74
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.31
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.78
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.53
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.23
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.69
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.61
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.32
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.87
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.82
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.26
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.09
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.39
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.14
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.70
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.95
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.33
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.77
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.18
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.13
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.08
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.19
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.58
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.69
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.44
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.83
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.49
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	13.67
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	9.70
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	8.10
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	8.08
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	5.00
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.64
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.50
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.37
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.02
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.