Gene detail

Detailed information of OS493_039057-T1 in Lophelia pertusa

Genomic Location: scaffold_889:9336...19238
NR annotation: KAJ7388236.1, hypothetical protein OS493_039057 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A7RIT9	3-hydroxyanthranilate 3,4-dioxygenase OS=Nematostella vectensis OX=45351 GN=v1g178517 PE=3 SV=1
Q0VCA8	3-hydroxyanthranilate 3,4-dioxygenase OS=Bos taurus OX=9913 GN=HAAO PE=1 SV=1
P46953	3-hydroxyanthranilate 3,4-dioxygenase OS=Rattus norvegicus OX=10116 GN=Haao PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004008 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06052 all species →	3-HAO	3-hydroxyanthranilic acid dioxygenase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014710 all species →	Homologous_superfamily	RmlC-like jelly roll fold	Interproscan
IPR011051 all species →	Homologous_superfamily	RmlC-like cupin domain superfamily	Interproscan
IPR010329 all species →	Family	3-hydroxyanthranilic acid dioxygenase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15497 all species →	3-HYDROXYANTHRANILATE 3,4-DIOXYGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000334 all species →	Molecular Function	3-hydroxyanthranilate 3,4-dioxygenase activity	Interproscan
GO:0005506 all species →	Molecular Function	iron ion binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0034354 all species →	Biological Process	'de novo' NAD biosynthetic process from tryptophan	Interproscan
GO:0046874 all species →	Biological Process	quinolinate metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00452	HAAO; 3-hydroxyanthranilate 3,4-dioxygenase	EC:1.13.11.6	Tryptophan metabolism	ko00380	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_039057-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

88.0Max TPM

38.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	40.47	72.51
polyp at pH7 6	18	18	38.09	56.35
coral polyp · control treatment	16	16	45.59	88.00
coral polyp · oil and dispersant treatment	16	16	28.98	52.87
coral polyp · oil treatment	16	16	43.00	80.56
coral polyp · dispersant treatment	16	16	32.73	68.38
Polyp	10	10	41.71	60.65

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	72.51
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	70.13
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	52.47
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	52.14
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	49.60
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.24
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.90
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.13
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.72
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.09
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.30
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.98
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.49
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.49
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.92
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.88
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.54
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.86
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	56.35
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	55.56
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	53.83
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.80
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.70
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.54
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.06
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.69
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.05
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.43
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.43
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.37
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.96
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.83
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.96
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.42
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.72
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.85
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	88.00
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	76.03
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	75.59
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	72.57
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	59.85
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.62
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.63
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.09
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.55
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.12
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.15
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.11
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.64
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.43
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.53
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.58
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	52.87
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.86
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.89
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.42
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.29
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.36
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.42
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.55
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.33
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.38
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.21
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.70
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.85
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.43
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.75
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.31
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	80.56
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	80.25
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	67.89
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	56.74
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.52
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.03
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.40
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.95
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.29
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.17
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.22
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.76
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.03
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.26
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.59
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.42
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	68.38
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	50.80
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	45.31
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.77
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.68
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.40
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.80
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.83
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.80
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.80
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.45
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.98
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.98
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.88
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.42
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.47
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	60.65
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	60.61
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	53.86
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	52.92
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	46.45
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	34.53
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	33.73
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	26.91
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	25.58
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	21.87

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.