Gene detail

Detailed information of OS493_039066-T1 in Lophelia pertusa

Genomic Location: scaffold_894:4106...17668
NR annotation: KAJ7314879.1, hypothetical protein OS493_039066 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O95822	Malonyl-CoA decarboxylase, mitochondrial OS=Homo sapiens OX=9606 GN=MLYCD PE=1 SV=3
P12617	Malonyl-CoA decarboxylase, mitochondrial OS=Anser anser anser OX=8844 GN=MLYCD PE=1 SV=2
Q920F5	Malonyl-CoA decarboxylase, mitochondrial OS=Rattus norvegicus OX=10116 GN=Mlycd PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003729 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17408 all species →	MCD_N	Malonyl-CoA decarboxylase N-terminal domain	Domain	Interproscan
PF05292 all species →	MCD	Malonyl-CoA decarboxylase C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035372 all species →	Domain	Malonyl-CoA decarboxylase, N-terminal	Interproscan
IPR038917 all species →	Family	Malonyl-CoA decarboxylase	Interproscan
IPR038351 all species →	Homologous_superfamily	Malonyl-CoA decarboxylase, N-terminal domain superfamily	Interproscan
IPR007956 all species →	Domain	Malonyl-CoA decarboxylase, C-terminal	Interproscan
IPR042303 all species →	Homologous_superfamily	Malonyl-CoA decarboxylase, C-terminal catalytic domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR28641 all species →	-	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005759 all species →	Cellular Component	mitochondrial matrix	Interproscan
GO:0005782 all species →	Cellular Component	peroxisomal matrix	Interproscan
GO:0006085 all species →	Biological Process	acetyl-CoA biosynthetic process	Interproscan
GO:0006633 all species →	Biological Process	fatty acid biosynthetic process	Interproscan
GO:0050080 all species →	Molecular Function	malonyl-CoA decarboxylase activity	Interproscan
GO:2001294 all species →	Biological Process	malonyl-CoA catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01578	MLYCD; malonyl-CoA decarboxylase	EC:4.1.1.9	Alcoholic liver disease	ko04936	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_039066-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

27.7Max TPM

7.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	7.91	10.01
polyp at pH7 6	18	18	8.09	11.15
coral polyp · control treatment	16	16	8.84	27.70
coral polyp · oil and dispersant treatment	16	16	7.10	21.52
coral polyp · oil treatment	16	16	7.57	12.23
coral polyp · dispersant treatment	16	16	4.27	9.07
Polyp	10	9	11.07	19.04

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.01
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.20
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.17
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.56
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.48
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.27
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.23
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.97
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.93
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.78
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.63
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.53
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.52
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.48
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.04
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.84
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.66
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.02
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.15
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.24
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.99
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.76
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.56
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.72
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.16
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.12
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.82
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.77
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.76
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.72
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.68
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.54
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.82
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.43
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.67
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.67
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.70
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.04
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.69
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.61
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.91
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.83
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.53
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.88
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.63
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.84
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.57
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.54
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.97
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.36
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.12
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.31
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.52
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.43
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.33
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.53
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.42
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.16
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.68
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.24
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.15
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.56
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.98
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.98
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.78
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.71
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.20
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.95
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.23
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.69
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.12
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.11
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.97
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.61
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.46
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.42
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.18
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.94
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.73
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.60
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.20
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.73
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.65
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.50
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.07
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.78
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.26
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.76
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.64
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.15
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.65
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.11
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.67
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.58
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.57
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.49
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.21
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.08
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.95
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.33
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	19.04
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	17.74
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	15.86
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	14.45
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	10.54
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	10.33
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	7.71
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	7.59
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	7.45
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.