Gene detail

Detailed information of OS493_039143-T1 in Lophelia pertusa

Genomic Location: scaffold_942:5388...22077
NR annotation: KAJ7314865.1, WD repeat-containing protein 35 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9P2L0	WD repeat-containing protein 35 OS=Homo sapiens OX=9606 GN=WDR35 PE=1 SV=3
A6N6J5	WD repeat-containing protein 35 OS=Rattus norvegicus OX=10116 GN=Wdr35 PE=1 SV=1
Q8BND3	WD repeat-containing protein 35 OS=Mus musculus OX=10090 GN=Wdr35 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002339 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12894 all species →	ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039857 all species →	Family	Intraflagellar transport protein 122/121 homolog	Interproscan
IPR024977 all species →	Domain	Anaphase-promoting complex subunit 4-like, WD40 domain	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12764 all species →	WD REPEAT DOMAIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0030991 all species →	Cellular Component	intraciliary transport particle A	Interproscan
GO:0035721 all species →	Biological Process	intraciliary retrograde transport	Interproscan
GO:0060271 all species →	Biological Process	cilium assembly	Interproscan
GO:0061512 all species →	Biological Process	protein localization to cilium	Interproscan
GO:0097730 all species →	Cellular Component	non-motile cilium	Interproscan
GO:1905515 all species →	Biological Process	non-motile cilium assembly	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_039143-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_039143-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

34.7Max TPM

9.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	9.16	15.98
polyp at pH7 6	18	16	6.58	11.53
coral polyp · control treatment	16	16	12.89	34.70
coral polyp · oil and dispersant treatment	16	16	10.36	23.52
coral polyp · oil treatment	16	16	11.09	19.52
coral polyp · dispersant treatment	16	16	9.30	21.06
Polyp	10	9	3.25	10.83

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.98
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.32
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.82
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.74
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.23
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.26
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.38
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.21
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.36
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.25
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.09
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.86
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.57
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.94
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.75
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.53
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.50
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.08
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.53
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.51
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.02
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.35
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.18
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.38
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.89
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.79
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.29
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.59
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.59
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.27
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.64
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.97
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.79
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.66
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.70
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.56
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.75
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.89
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.64
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.94
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.55
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.15
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.06
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.90
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.13
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.12
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.85
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.72
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.52
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.83
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.52
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.76
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.38
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.19
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.64
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.45
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.14
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.47
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.04
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.73
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.63
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.21
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.91
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.66
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.04
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.98
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.52
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.59
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.70
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.67
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.65
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.51
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.87
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.72
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.12
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.34
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.24
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.92
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.18
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.86
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.17
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.36
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.06
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.88
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.57
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.53
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.47
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.92
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.15
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.16
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.69
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.59
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.46
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.26
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.48
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.22
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.92
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.50
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	10.83
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	5.75
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	5.31
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3.09
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	2.37
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.71
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.51
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.03
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.91
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.