Gene detail

Detailed information of OS493_039146-T1 in Lophelia pertusa

Genomic Location: scaffold_945:6898...20938
NR annotation: KAJ7375750.1, CLIP-associating protein 1, partial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7Z460	CLIP-associating protein 1 OS=Homo sapiens OX=9606 GN=CLASP1 PE=1 SV=1
Q4U0G1	CLIP-associating protein 1-A OS=Xenopus laevis OX=8355 GN=clasp1-a PE=2 SV=2
A1A5K2	CLIP-associating protein 1-B OS=Xenopus laevis OX=8355 GN=clasp1b PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001513 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12348 all species →	CLASP_N	CLASP N terminal	Repeat	Interproscan
PF21041 all species →	XMAP215_CLASP_TOG	XMAP215/Dis1/CLASP, TOG domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR024395 all species →	Domain	CLASP N-terminal domain	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR021133 all species →	Repeat	HEAT, type 2	Interproscan
IPR048491 all species →	Domain	XMAP215/Dis1/CLASP, TOG domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21567 all species →	CLASP	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000226 all species →	Biological Process	microtubule cytoskeleton organization	Interproscan
GO:0005881 all species →	Cellular Component	cytoplasmic microtubule	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0015631 all species →	Molecular Function	tubulin binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_039146-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_039146-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

65.3Max TPM

21.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	22.81	41.86
polyp at pH7 6	18	18	17.34	28.03
coral polyp · control treatment	16	16	26.72	65.25
coral polyp · oil and dispersant treatment	16	16	21.43	29.23
coral polyp · oil treatment	16	16	23.10	40.31
coral polyp · dispersant treatment	16	16	23.76	35.72
Polyp	10	10	10.73	30.56

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.86
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.80
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.70
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.27
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.14
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.94
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.66
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.62
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.45
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.95
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.84
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.47
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.96
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.35
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.40
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.62
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.45
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.14
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.03
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.00
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.17
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.07
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.38
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.40
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.17
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.92
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.90
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.59
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.67
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.47
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.94
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.63
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.39
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.38
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.86
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.18
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	65.25
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.72
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.29
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.54
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.80
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.89
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.61
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.00
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.03
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.99
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.31
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.22
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.98
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.26
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.10
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.50
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.23
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.09
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.00
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.35
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.29
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.54
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.99
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.92
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.42
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.09
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.87
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.68
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.80
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.33
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.99
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.25
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.31
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.32
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.36
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.06
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.32
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.81
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.27
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.97
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.04
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.87
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.75
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.37
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.63
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.53
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.62
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.41
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.72
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.52
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.18
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.00
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.11
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.45
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.03
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.35
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.70
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.33
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.58
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.67
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.37
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.58
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.25
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.36
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	30.56
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	14.86
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	13.54
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	13.36
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	11.14
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	10.32
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.74
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.60
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	2.85
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.35

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.