Gene detail

Detailed information of OS493_039170-T1 in Lophelia pertusa

Genomic Location: scaffold_966:8574...10879
NR annotation: KAJ7314702.1, Isobutyryl-CoA dehydrogenase, mitochondrial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9D7B6	Isobutyryl-CoA dehydrogenase, mitochondrial OS=Mus musculus OX=10090 GN=Acad8 PE=1 SV=2
Q9UKU7	Isobutyryl-CoA dehydrogenase, mitochondrial OS=Homo sapiens OX=9606 GN=ACAD8 PE=1 SV=1
Q0NXR6	Isobutyryl-CoA dehydrogenase, mitochondrial OS=Bos taurus OX=9913 GN=ACAD8 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000738 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02770 all species →	Acyl-CoA_dh_M	Acyl-CoA dehydrogenase, middle domain	Domain	Interproscan
PF02771 all species →	Acyl-CoA_dh_N	Acyl-CoA dehydrogenase, N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006091 all species →	Domain	Acyl-CoA oxidase/dehydrogenase, middle domain	Interproscan
IPR006089 all species →	Conserved_site	Acyl-CoA dehydrogenase, conserved site	Interproscan
IPR037069 all species →	Homologous_superfamily	Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily	Interproscan
IPR052547 all species →	Family	Mitochondrial Isobutyryl-CoA Dehydrogenase	Interproscan
IPR046373 all species →	Homologous_superfamily	Acyl-CoA oxidase/dehydrogenase, middle domain superfamily	Interproscan
IPR009100 all species →	Homologous_superfamily	Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily	Interproscan
IPR013786 all species →	Domain	Acyl-CoA dehydrogenase/oxidase, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43831 all species →	ISOBUTYRYL-COA DEHYDROGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016627 all species →	Molecular Function	oxidoreductase activity, acting on the CH-CH group of donors	Interproscan
GO:0003995 all species →	Molecular Function	acyl-CoA dehydrogenase activity	Interproscan
GO:0050660 all species →	Molecular Function	flavin adenine dinucleotide binding	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_039170-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_039170-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

77TPM > 0

7Conditions

21.1Max TPM

5.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	10	4.36	11.25
polyp at pH7 6	18	8	3.18	12.87
coral polyp · control treatment	16	13	6.76	14.12
coral polyp · oil and dispersant treatment	16	13	5.71	12.79
coral polyp · oil treatment	16	13	5.90	21.09
coral polyp · dispersant treatment	16	11	5.50	18.04
Polyp	10	9	5.25	9.59

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.25
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.72
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.01
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.27
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.62
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.22
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.78
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.12
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.23
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.19
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.87
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.99
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.71
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.98
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.74
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.68
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.08
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.22
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.12
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.52
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.30
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.09
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.79
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.68
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.74
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.72
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.67
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.49
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.26
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.37
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.46
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.79
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.51
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.65
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.76
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.01
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.92
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.81
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.24
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.05
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.54
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.52
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.22
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.38
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.09
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.63
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.49
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.77
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.28
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.53
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.46
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.28
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.02
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.89
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.87
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.00
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.14
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.04
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.49
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.45
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.17
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.51
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.27
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.56
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.42
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.80
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.99
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.22
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	9.59
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	8.10
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	7.69
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	7.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	6.12
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	5.02
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.85
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.20
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.97
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.