Gene detail

Detailed information of OS493_039183-T1 in Lophelia pertusa

Genomic Location: scaffold_974:6090...16661
NR annotation: KAJ7381758.1, WD repeat-containing protein 35 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9P2L0	WD repeat-containing protein 35 OS=Homo sapiens OX=9606 GN=WDR35 PE=1 SV=3
A6N6J5	WD repeat-containing protein 35 OS=Rattus norvegicus OX=10116 GN=Wdr35 PE=1 SV=1
Q8BND3	WD repeat-containing protein 35 OS=Mus musculus OX=10090 GN=Wdr35 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002339 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_039183-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR040379 all species →	Family	WD repeat-containing protein 19/dyf-2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14920 all species →	OSMOTIC AVOIDANCE ABNORMAL PROTEIN 1/WD REPEAT MEMBRANE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005929 all species →	Cellular Component	cilium	Interproscan
GO:0030991 all species →	Cellular Component	intraciliary transport particle A	Interproscan
GO:0035721 all species →	Biological Process	intraciliary retrograde transport	Interproscan
GO:0060271 all species →	Biological Process	cilium assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_039183-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_039183-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

63.6Max TPM

25.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	25.48	40.42
polyp at pH7 6	18	18	22.54	30.93
coral polyp · control treatment	16	16	32.14	63.61
coral polyp · oil and dispersant treatment	16	16	23.34	40.30
coral polyp · oil treatment	16	16	31.47	45.80
coral polyp · dispersant treatment	16	16	19.61	40.83
Polyp	10	10	18.31	37.75

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.42
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.97
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.77
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.79
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.79
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.02
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.99
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.98
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.03
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.80
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.98
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.12
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.45
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.20
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.06
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.82
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.51
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.85
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.93
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.81
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.42
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.01
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.74
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.18
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.53
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.45
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.91
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.89
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.31
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.01
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.59
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.53
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.62
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.06
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.54
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.23
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	63.61
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.33
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.27
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.19
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.30
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.18
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.48
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.45
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.94
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.49
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.93
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.13
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.45
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.87
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.37
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.25
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.30
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.40
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.56
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.02
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.47
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.55
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.85
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.39
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.83
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.40
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.75
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.66
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.69
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.08
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.04
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.50
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.80
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.19
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.62
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.84
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.50
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.32
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.33
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.65
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.02
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.87
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.23
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.76
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.85
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.15
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.40
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.01
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.83
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.12
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.68
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.87
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.74
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.60
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.74
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.08
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.37
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.55
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.56
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.14
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.05
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.08
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.44
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.90
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	37.75
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	32.25
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	30.87
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	20.34
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	19.18
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	18.94
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	7.33
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	6.79
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	5.30
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.31

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.