Gene detail

Detailed information of OS493_039226-T1 in Lophelia pertusa

Genomic Location: scaffold_998:479...3020
NR annotation: KAJ7381749.1, hypothetical protein OS493_039226, partial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5FVR2	Thymidine phosphorylase OS=Rattus norvegicus OX=10116 GN=Tymp PE=1 SV=1
Q99N42	Thymidine phosphorylase OS=Mus musculus OX=10090 GN=Tymp PE=2 SV=1
P19971	Thymidine phosphorylase OS=Homo sapiens OX=9606 GN=TYMP PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005006 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07831 all species →	PYNP_C	Pyrimidine nucleoside phosphorylase C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036566 all species →	Homologous_superfamily	Pyrimidine nucleoside phosphorylase-like, C-terminal domain superfamily	Interproscan
IPR035902 all species →	Homologous_superfamily	Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily	Interproscan
IPR000053 all species →	Family	Thymidine/pyrimidine-nucleoside phosphorylase	Interproscan
IPR013102 all species →	Domain	Pyrimidine nucleoside phosphorylase, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10515 all species →	THYMIDINE PHOSPHORYLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006213 all species →	Biological Process	pyrimidine nucleoside metabolic process	Interproscan
GO:0016763 all species →	Molecular Function	pentosyltransferase activity	Interproscan
GO:0004645 all species →	Molecular Function	1,4-alpha-oligoglucan phosphorylase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006206 all species →	Biological Process	pyrimidine nucleobase metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_039226-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_039226-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

51.6Max TPM

17.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	18.36	30.68
polyp at pH7 6	18	18	15.55	30.62
coral polyp · control treatment	16	16	24.84	51.64
coral polyp · oil and dispersant treatment	16	16	14.17	32.35
coral polyp · oil treatment	16	16	17.62	42.50
coral polyp · dispersant treatment	16	16	15.58	34.66
Polyp	10	10	10.80	26.72

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.68
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.18
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.18
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.35
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.01
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.12
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.51
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.79
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.19
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.34
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.57
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.86
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.51
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.52
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.11
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.24
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.65
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.71
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.62
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.54
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.67
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.84
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.46
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.38
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.71
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.83
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.37
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.20
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.05
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.30
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.89
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.22
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.15
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.35
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.28
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.00
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	51.64
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.55
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.63
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.14
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.09
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.56
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.74
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.27
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.67
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.91
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.08
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.47
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.91
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.86
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.94
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.01
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.35
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.22
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.16
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.09
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.47
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.58
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.26
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.03
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.03
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.89
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.42
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.46
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.76
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.86
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.66
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.53
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.50
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.73
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.44
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.81
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.53
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.19
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.99
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.21
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.32
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.26
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.34
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.03
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.67
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.15
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.83
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.93
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.66
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.19
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.09
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.04
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.58
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.97
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.70
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.31
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.02
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.58
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.16
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.93
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.46
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.33
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.05
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.15
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	26.72
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	20.34
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	14.37
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	9.15
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	8.52
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	8.37
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	6.64
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	6.25
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	5.25
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.36

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.