Gene detail

Detailed information of OS493_039245-T1 in Lophelia pertusa

Genomic Location: scaffold_1014:19828...20861
NR annotation: KAJ7314694.1, E1 ubiquitin-activating protein, partial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A3KMV5	Ubiquitin-like modifier-activating enzyme 1 OS=Bos taurus OX=9913 GN=UBA1 PE=2 SV=1
P22314	Ubiquitin-like modifier-activating enzyme 1 OS=Homo sapiens OX=9606 GN=UBA1 PE=1 SV=3
Q02053	Ubiquitin-like modifier-activating enzyme 1 OS=Mus musculus OX=10090 GN=Uba1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0061852 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09358 all species →	E1_UFD	Ubiquitin fold domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038252 all species →	Homologous_superfamily	Ubiquitin-activating enzyme E1, C-terminal domain superfamily	Interproscan
IPR018965 all species →	Domain	Ubiquitin-activating enzyme E1, C-terminal	Interproscan

PANTHER

No PANTHER signature was detected for OS493_039245-T1. This gene does have a gene model — the search simply returned no hit.

Gene Ontology

No Gene Ontology signature was detected for OS493_039245-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_039245-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_039245-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

193.0Max TPM

60.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	110.78	192.97
polyp at pH7 6	18	18	107.07	178.90
coral polyp · control treatment	16	16	29.93	47.97
coral polyp · oil and dispersant treatment	16	16	29.80	58.92
coral polyp · oil treatment	16	16	28.06	50.07
coral polyp · dispersant treatment	16	16	19.76	43.92
Polyp	10	10	99.97	171.09

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	192.97
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	173.39
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	138.77
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	135.19
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	131.44
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	120.55
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	113.45
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	104.06
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	102.39
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	97.22
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	96.59
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	92.52
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	92.24
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	87.60
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	87.46
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	84.74
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	74.24
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	69.28
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	178.90
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	173.64
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	128.63
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	127.94
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	118.32
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	115.19
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	109.41
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	104.23
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	99.18
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	99.13
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	97.80
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	90.30
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	85.58
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	84.39
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	83.12
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	79.39
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	77.77
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	74.39
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.97
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.62
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.24
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.39
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.61
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.91
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.38
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.41
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.17
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.17
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.84
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.27
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.18
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.30
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.66
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.76
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	58.92
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.62
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.43
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.48
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.75
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.70
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.88
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.04
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.23
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.38
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.20
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.97
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.83
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.76
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.19
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.35
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	50.07
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.21
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.00
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.90
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.68
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.36
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.74
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.49
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.56
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.00
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.47
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.34
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.70
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.96
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.89
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.55
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.92
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.22
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.05
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.96
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.12
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.11
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.86
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.27
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.57
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.89
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.52
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.47
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.37
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.03
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.88
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.86
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	171.09
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	118.39
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	115.18
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	98.31
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	94.38
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	92.49
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	80.29
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	79.78
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	78.33
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	71.46

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.