Gene detail

Detailed information of OS493_039295-T1 in Lophelia pertusa

Genomic Location: scaffold_1047:6283...6846
NR annotation: KAJ7375722.1, Synaptosomal-associated protein [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P36975	Synaptosomal-associated protein 25 OS=Drosophila melanogaster OX=7227 GN=Snap25 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008696 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_039295-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR000727 all species →	Domain	Target SNARE coiled-coil homology domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19305 all species →	SYNAPTOSOMAL ASSOCIATED PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005484 all species →	Molecular Function	SNAP receptor activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006887 all species →	Biological Process	exocytosis	Interproscan
GO:0006906 all species →	Biological Process	vesicle fusion	Interproscan
GO:0016082 all species →	Biological Process	synaptic vesicle priming	Interproscan
GO:0019905 all species →	Molecular Function	syntaxin binding	Interproscan
GO:0031201 all species →	Cellular Component	SNARE complex	Interproscan
GO:0031629 all species →	Biological Process	synaptic vesicle fusion to presynaptic active zone membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_039295-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_039295-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

28.0Max TPM

10.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	6.21	11.40
polyp at pH7 6	18	18	6.50	9.52
coral polyp · control treatment	16	16	12.16	21.14
coral polyp · oil and dispersant treatment	16	16	15.74	26.65
coral polyp · oil treatment	16	16	10.22	18.40
coral polyp · dispersant treatment	16	16	14.18	27.97
Polyp	10	8	3.84	12.74

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.40
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.18
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.00
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.95
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.64
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.11
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.87
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.82
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.57
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.51
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.06
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.52
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.49
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.07
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.68
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.33
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.30
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.25
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.52
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.61
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.23
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.19
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.19
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.77
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.75
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.66
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.59
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.62
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.52
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.19
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.61
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.59
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.92
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.79
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.60
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.67
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.14
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.89
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.31
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.68
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.08
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.69
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.56
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.41
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.18
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.24
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.20
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.64
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.56
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.40
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.38
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.21
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.65
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.80
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.38
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.51
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.56
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.58
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.03
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.08
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.59
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.42
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.09
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.31
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.36
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.13
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.79
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.60
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.40
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.63
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.94
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.70
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.75
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.26
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.85
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.88
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.56
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.21
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.07
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.89
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.72
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.11
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.03
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.49
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.97
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.45
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.10
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.66
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.93
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.58
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.64
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.22
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.04
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.82
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.20
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.89
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.84
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.81
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.48
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.21
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	12.74
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	9.75
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	8.75
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	5.04
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	1.09
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.70
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.28
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	0.04
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.