Gene detail

Detailed information of OS493_039309-T1 in Lophelia pertusa

Genomic Location: scaffold_1058:3425...10712
NR annotation: KAJ7381735.1, hypothetical protein OS493_039309 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010457 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13896 all species →	Glyco_transf_49	Glycosyl-transferase for dystroglycan	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051292 all species →	Family	Alpha-1,3-xylosyltransferase/Beta-1,3-glucuronyltransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12270 all species →	GLYCOSYLTRANSFERASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0015020 all species →	Molecular Function	glucuronosyltransferase activity	Interproscan
GO:0035269 all species →	Biological Process	protein O-linked mannosylation	Interproscan
GO:0042285 all species →	Molecular Function	xylosyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_039309-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_039309-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

103TPM > 0

7Conditions

17.1Max TPM

4.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	3.80	7.92
polyp at pH7 6	18	15	3.65	13.80
coral polyp · control treatment	16	16	6.22	13.66
coral polyp · oil and dispersant treatment	16	16	4.25	7.76
coral polyp · oil treatment	16	15	6.22	17.14
coral polyp · dispersant treatment	16	15	3.71	9.72
Polyp	10	9	1.51	5.86

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.92
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.81
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.60
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.83
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.50
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.31
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.97
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.91
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.84
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.77
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.69
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.28
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.22
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.01
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.94
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.43
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.37
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.80
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.29
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.72
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.28
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.85
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.67
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.36
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.94
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.84
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.68
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.50
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.57
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.54
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.09
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.62
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.66
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.51
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.01
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.17
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.95
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.68
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.57
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.37
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.33
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.06
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.84
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.59
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.77
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.31
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.86
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.76
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.76
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.40
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.68
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.28
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.15
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.62
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.56
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.94
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.80
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.67
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.47
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.06
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.39
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.38
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.97
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.84
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.14
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.29
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.67
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.49
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.83
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.01
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.95
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.92
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.60
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.27
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.18
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.17
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.90
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.69
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.41
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.72
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.14
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.23
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.05
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.85
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.79
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.68
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.50
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.40
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.02
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.87
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.28
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.20
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.39
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.24
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	5.86
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.91
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	1.05
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.97
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.82
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.73
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.71
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	0.66
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	0.37
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.