Detailed information of OS493_039312-T1 in Lophelia pertusa

Genomic Location: scaffold_1062:1921...10504
NR annotation: KAJ7314520.1, Bromodomain and WD repeat-containing protein 3 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
A2AHJ4Bromodomain and WD repeat-containing protein 3 OS=Mus musculus OX=10090 GN=Brwd3 PE=1 SV=1
Q8VDD9PH-interacting protein OS=Mus musculus OX=10090 GN=Phip PE=1 SV=2
Q8WWQ0PH-interacting protein OS=Homo sapiens OX=9606 GN=PHIP PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003460 (this species only)
Ubiquitin familyUBD|Other|Beta-prp · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|DWD · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00400
all species →		WD40WD domain, G-beta repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036322
all species →		Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR015943
all species →		Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR001680
all species →		RepeatWD40 repeatInterproscan
IPR019775
all species →		Conserved_siteWD40 repeat, conserved siteInterproscan
IPR052060
all species →		FamilyBromodomain and WD repeat-containingInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR16266
all species →		WD REPEAT DOMAIN 9Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006357
all species →		Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0007010
all species →		Biological Processcytoskeleton organizationInterproscan
GO:0008360
all species →		Biological Processregulation of cell shapeInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_039312-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_039312-T1 global co-expression network
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