Gene detail

Detailed information of OS493_039361-T1 in Lophelia pertusa

Genomic Location: scaffold_1096:4845...8043
NR annotation: KAJ7369398.1, Lon protease mitochondrial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q924S5	Lon protease homolog, mitochondrial OS=Rattus norvegicus OX=10116 GN=Lonp1 PE=2 SV=1
Q8CGK3	Lon protease homolog, mitochondrial OS=Mus musculus OX=10090 GN=Lonp1 PE=1 SV=2
Q59HJ6	Lon protease homolog, mitochondrial OS=Bos taurus OX=9913 GN=LONP1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001329 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05362 all species →	Lon_C	Lon protease (S16) C-terminal proteolytic domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014721 all species →	Homologous_superfamily	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Interproscan
IPR008269 all species →	Domain	Peptidase S16, Lon proteolytic domain	Interproscan
IPR020568 all species →	Homologous_superfamily	Ribosomal protein uS5 domain 2-type superfamily	Interproscan
IPR008268 all species →	Active_site	Peptidase S16, active site	Interproscan
IPR027065 all species →	Family	Lon protease	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43718 all species →	LON PROTEASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004176 all species →	Molecular Function	ATP-dependent peptidase activity	Interproscan
GO:0004252 all species →	Molecular Function	serine-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0003697 all species →	Molecular Function	single-stranded DNA binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005759 all species →	Cellular Component	mitochondrial matrix	Interproscan
GO:0006515 all species →	Biological Process	protein quality control for misfolded or incompletely synthesized proteins	Interproscan
GO:0007005 all species →	Biological Process	mitochondrion organization	Interproscan
GO:0030163 all species →	Biological Process	protein catabolic process	Interproscan
GO:0051131 all species →	Biological Process	chaperone-mediated protein complex assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_039361-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_039361-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

62.9Max TPM

18.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	10.92	17.36
polyp at pH7 6	18	18	15.53	22.18
coral polyp · control treatment	16	16	20.73	46.92
coral polyp · oil and dispersant treatment	16	16	30.64	62.87
coral polyp · oil treatment	16	16	19.47	26.84
coral polyp · dispersant treatment	16	16	15.99	27.76
Polyp	10	10	16.85	28.40

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.36
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.65
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.18
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.86
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.75
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.68
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.01
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.65
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.00
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.93
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.30
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.04
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.31
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.86
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.52
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.21
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.65
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.64
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.18
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.93
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.67
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.61
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.19
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.95
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.82
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.73
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.42
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.20
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.70
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.75
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.79
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.09
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.56
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.00
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.02
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.97
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.92
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.43
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.11
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.64
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.68
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.19
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.82
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.78
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.16
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.19
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.56
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.89
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.71
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.47
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.25
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.87
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	62.87
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	49.44
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.09
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.44
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.35
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.36
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.53
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.95
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.10
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.44
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.62
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.89
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.72
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.57
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.73
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.17
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.84
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.65
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.50
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.36
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.50
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.60
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.43
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.41
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.82
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.10
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.10
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.82
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.58
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.32
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.88
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.63
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.76
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.62
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.55
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.56
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.72
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.04
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.81
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.67
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.48
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.99
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.00
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.30
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.99
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.76
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.66
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.99
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	28.40
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	23.24
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	22.50
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	20.03
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	18.99
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	18.97
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	12.41
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	8.51
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	8.48
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	6.96

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.