Gene detail

Detailed information of OS493_039374-T1 in Lophelia pertusa

Genomic Location: scaffold_1104:9250...10215
NR annotation: KAJ7314317.1, hypothetical protein OS493_039374 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O31611	GTP pyrophosphokinase YjbM OS=Bacillus subtilis (strain 168) OX=224308 GN=yjbM PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010721 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04607 all species →	RelA_SpoT	Region found in RelA / SpoT proteins	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007685 all species →	Domain	RelA/SpoT	Interproscan
IPR043519 all species →	Homologous_superfamily	Nucleotidyltransferase superfamily	Interproscan
IPR052366 all species →	Family	GTP Pyrophosphokinase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47837 all species →	GTP PYROPHOSPHOKINASE YJBM	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0015969 all species →	Biological Process	guanosine tetraphosphate metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_039374-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_039374-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

101TPM > 0

7Conditions

63.1Max TPM

5.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	6.86	15.75
polyp at pH7 6	18	18	14.97	63.07
coral polyp · control treatment	16	14	2.83	8.27
coral polyp · oil and dispersant treatment	16	16	2.75	9.38
coral polyp · oil treatment	16	16	4.48	25.13
coral polyp · dispersant treatment	16	12	2.11	14.74
Polyp	10	7	0.72	2.88

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.75
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.17
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.92
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.03
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.75
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.05
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.57
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.86
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.13
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.01
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.34
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.18
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.68
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.02
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.93
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.82
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.18
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.14
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	63.07
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	55.69
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.24
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.90
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.46
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.37
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.28
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.48
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.49
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.23
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.12
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.14
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.99
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.35
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.97
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.85
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.83
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.27
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.25
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.29
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.31
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.08
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.70
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.59
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.55
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.55
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.25
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.19
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.13
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.08
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.02
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.38
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.24
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.72
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.18
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.17
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.17
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.81
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.73
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.83
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.49
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.36
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.29
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.28
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.15
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.12
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.07
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.13
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.39
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.94
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.85
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.83
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.77
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.74
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.69
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.52
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.16
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.40
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.56
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.25
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.21
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.12
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.10
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.74
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.43
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.96
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.55
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.63
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.38
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.28
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.95
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.24
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.22
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.17
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.16
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.88
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	2.57
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.84
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.42
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.31
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	0.17
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.04
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.