Gene detail

Detailed information of OS493_039389-T1 in Lophelia pertusa

Genomic Location: scaffold_1113:9606...16073
NR annotation: KAJ7375715.1, Ropporin-1-like protein [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q66IC9	Ropporin-1-like protein OS=Danio rerio OX=7955 GN=ropn1l PE=2 SV=1
Q4KLL5	Ropporin-1 OS=Rattus norvegicus OX=10116 GN=Ropn1 PE=1 SV=1
Q9EQ00	Ropporin-1-like protein OS=Mus musculus OX=10090 GN=Ropn1l PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007401 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_039389-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR047844 all species →	Domain	Ropporin, dimerization/docking domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14952 all species →	ROPPORIN-1-LIKE PROTEIN	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_039389-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_039389-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_039389-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

104TPM > 0

7Conditions

45.3Max TPM

6.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	8.39	18.88
polyp at pH7 6	18	16	7.39	14.47
coral polyp · control treatment	16	16	5.83	27.31
coral polyp · oil and dispersant treatment	16	14	5.79	45.34
coral polyp · oil treatment	16	16	3.66	6.33
coral polyp · dispersant treatment	16	15	3.54	5.30
Polyp	10	10	13.87	20.83

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.88
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.74
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.98
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.91
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.91
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.06
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.96
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.13
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.48
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.08
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.64
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.01
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.36
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.29
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.41
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.10
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.01
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.47
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.71
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.65
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.44
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.06
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.04
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.08
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.80
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.44
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.89
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.39
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.66
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.25
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.19
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.68
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.28
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.31
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.06
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.50
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.77
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.43
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.83
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.37
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.17
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.76
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.55
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.14
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.02
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.96
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.62
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.50
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.35
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.34
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.82
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.79
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.56
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.09
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.03
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.99
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.94
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.56
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.54
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.53
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.35
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.07
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.97
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.33
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.52
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.30
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.41
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.31
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.11
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.07
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.00
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.73
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.24
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.90
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.82
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.41
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.33
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.81
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.19
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.30
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.21
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.93
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.46
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.27
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.11
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.98
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.78
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.77
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.63
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.43
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.35
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.45
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.35
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.60
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	20.83
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	19.97
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	18.46
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	13.63
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	13.10
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	13.06
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	12.93
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	12.21
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	8.10
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	6.46

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.