Gene detail

Detailed information of OS493_039418-T1 in Lophelia pertusa

Genomic Location: scaffold_1131:169...5921
NR annotation: KAJ7375710.1, Inactive peptidyl-prolyl cis-trans isomerase fkbp6, partial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9LDC0	Peptidyl-prolyl cis-trans isomerase FKBP42 OS=Arabidopsis thaliana OX=3702 GN=FKBP42 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004729 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07719 all species →	TPR_2	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR042282 all species →	Family	Inactive peptidyl-prolyl cis-trans isomerase FKBP6/shutdown	Interproscan
IPR013105 all species →	Repeat	Tetratricopeptide repeat 2	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR036867 all species →	Homologous_superfamily	R3H domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46674 all species →	INACTIVE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP6	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0007283 all species →	Biological Process	spermatogenesis	Interproscan
GO:0034587 all species →	Biological Process	piRNA processing	Interproscan
GO:0051879 all species →	Molecular Function	Hsp90 protein binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_039418-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_039418-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

104TPM > 0

7Conditions

31.3Max TPM

13.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	16.49	24.96
polyp at pH7 6	18	18	18.37	31.34
coral polyp · control treatment	16	15	12.94	24.22
coral polyp · oil and dispersant treatment	16	14	9.00	17.04
coral polyp · oil treatment	16	15	14.29	23.97
coral polyp · dispersant treatment	16	15	8.66	18.82
Polyp	10	9	11.92	26.22

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.96
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.66
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.45
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.07
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.05
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.23
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.12
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.93
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.73
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.53
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.27
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.41
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.39
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.57
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.00
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.81
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.70
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.91
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.34
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.57
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.48
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.70
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.39
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.88
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.38
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.36
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.15
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.07
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.84
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.84
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.52
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.39
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.60
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.25
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.49
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.45
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.22
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.98
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.80
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.89
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.51
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.80
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.59
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.75
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.79
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.67
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.45
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.50
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.44
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.44
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.19
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.04
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.95
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.74
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.07
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.75
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.65
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.26
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.88
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.21
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.79
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.48
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.25
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.46
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.42
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.97
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.31
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.77
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.59
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.42
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.69
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.21
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.11
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.82
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.86
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.73
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.38
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.23
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.35
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.23
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.82
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.26
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.88
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.85
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.51
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.90
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.03
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.07
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.07
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.58
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.01
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.09
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.09
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.98
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.34
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	26.22
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	23.12
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	20.09
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	14.12
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	10.92
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	10.33
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	6.98
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.26
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.13
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.