Detailed information of OS493_039445-T1 in Lophelia pertusa

Genomic Location: scaffold_1165:11899...17594
NR annotation: KAJ7388171.1, hypothetical protein OS493_039445, partial [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8WUQ7Splicing factor Cactin OS=Homo sapiens OX=9606 GN=CACTIN PE=1 SV=3
Q9CS00Splicing factor Cactin OS=Mus musculus OX=10090 GN=Cactin PE=1 SV=2
F1Q8W0Splicing factor Cactin OS=Danio rerio OX=7955 GN=cactin PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005514 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF10312
all species →		Cactin_midConserved mid region of cactinFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR018816
all species →		DomainSplicing factor cactin, central domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21737
all species →		POLYGLUTAMINE BINDING PROTEIN 1/MARVEL MEMBRANE-ASSOCIATING DOMAIN CONTAINING 3Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005681
all species →		Cellular Componentspliceosomal complexInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0045292
all species →		Biological ProcessmRNA cis splicing, via spliceosomeInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_039445-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_039445-T1 global co-expression network
TOP