Gene detail

Detailed information of OS493_039481-T1 in Lophelia pertusa

Genomic Location: scaffold_1192:6785...11290
NR annotation: KAJ7369377.1, hypothetical protein OS493_039481, partial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3SYC2	2-acylglycerol O-acyltransferase 2 OS=Homo sapiens OX=9606 GN=MOGAT2 PE=1 SV=2
Q6E213	Acyl-CoA wax alcohol acyltransferase 2 OS=Homo sapiens OX=9606 GN=AWAT2 PE=1 SV=1
Q4V9F0	Diacylglycerol O-acyltransferase 2 OS=Danio rerio OX=7955 GN=dgat2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000760 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03982 all species →	DAGAT	Diacylglycerol acyltransferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007130 all species →	Family	Diacylglycerol acyltransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12317 all species →	DIACYLGLYCEROL O-ACYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004144 all species →	Molecular Function	diacylglycerol O-acyltransferase activity	Interproscan
GO:0005789 all species →	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0019432 all species →	Biological Process	triglyceride biosynthetic process	Interproscan
GO:0008374 all species →	Molecular Function	O-acyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_039481-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_039481-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

104TPM > 0

7Conditions

24.4Max TPM

5.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	16	4.22	6.55
polyp at pH7 6	18	15	3.57	9.89
coral polyp · control treatment	16	16	8.32	24.38
coral polyp · oil and dispersant treatment	16	16	6.97	15.55
coral polyp · oil treatment	16	16	5.85	14.58
coral polyp · dispersant treatment	16	16	5.20	8.09
Polyp	10	9	2.18	4.41

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.55
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.49
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.05
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.95
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.88
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.56
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.53
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.36
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.58
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.13
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.95
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.88
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.48
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.00
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.79
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.76
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.89
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.77
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.27
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.79
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.78
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.01
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.94
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.82
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.73
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.64
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.05
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.52
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.31
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.03
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.76
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.38
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.65
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.27
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.90
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.51
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.37
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.00
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.73
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.60
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.71
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.64
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.62
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.52
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.33
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.97
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.98
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.55
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.60
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.38
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.31
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.28
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.78
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.42
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.00
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.68
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.39
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.95
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.95
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.89
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.79
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.77
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.75
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.58
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.77
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.95
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.85
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.01
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.93
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.62
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.32
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.17
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.13
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.08
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.05
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.50
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.38
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.36
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.88
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.09
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.06
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.97
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.63
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.66
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.63
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.67
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.55
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.50
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.09
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.32
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.18
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.61
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.70
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.21
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.28
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.41
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.26
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3.12
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.39
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.27
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	1.60
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.43
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.22
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.10
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.