Gene detail

Detailed information of OS493_039539-T1 in Lophelia pertusa

Genomic Location: scaffold_1241:543...15428
NR annotation: KAJ7348206.1, Exocyst complex component 4 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q62824	Exocyst complex component 4 OS=Rattus norvegicus OX=10116 GN=Exoc4 PE=1 SV=1
O35382	Exocyst complex component 4 OS=Mus musculus OX=10090 GN=Exoc4 PE=1 SV=2
Q96A65	Exocyst complex component 4 OS=Homo sapiens OX=9606 GN=EXOC4 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003014 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_039539-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR039682 all species →	Family	Exocyst complex component Sec8/EXOC4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14146 all species →	EXOCYST COMPLEX COMPONENT 4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000145 all species →	Cellular Component	exocyst	Interproscan
GO:0006887 all species →	Biological Process	exocytosis	Interproscan
GO:0006893 all species →	Biological Process	Golgi to plasma membrane transport	Interproscan
GO:0007268 all species →	Biological Process	chemical synaptic transmission	Interproscan
GO:0032584 all species →	Cellular Component	growth cone membrane	Interproscan
GO:0045202 all species →	Cellular Component	synapse	Interproscan
GO:0090522 all species →	Biological Process	vesicle tethering involved in exocytosis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_039539-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_039539-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

18.1Max TPM

5.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	8.69	18.07
polyp at pH7 6	18	18	8.21	14.95
coral polyp · control treatment	16	16	5.34	10.32
coral polyp · oil and dispersant treatment	16	16	3.15	5.32
coral polyp · oil treatment	16	16	4.87	10.49
coral polyp · dispersant treatment	16	16	4.20	8.90
Polyp	10	9	4.14	12.02

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.07
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.96
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.96
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.94
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.87
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.20
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.99
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.73
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.88
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.73
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.53
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.42
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.79
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.73
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.75
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.08
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.00
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.77
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.95
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.93
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.74
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.16
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.79
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.40
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.80
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.74
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.35
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.31
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.06
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.37
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.17
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.97
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.94
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.33
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.53
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.18
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.32
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.01
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.17
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.00
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.18
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.06
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.72
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.32
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.93
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.67
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.52
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.63
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.38
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.38
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.26
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.87
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.32
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.05
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.73
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.55
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.31
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.30
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.59
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.43
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.16
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.27
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.06
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.85
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.76
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.48
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.30
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.20
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.49
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.79
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.76
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.81
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.05
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.88
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.68
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.20
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.18
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.09
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.81
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.56
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.36
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.74
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.01
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.59
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.90
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.72
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.75
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.23
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.81
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.21
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.10
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.99
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.92
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.89
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.66
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.52
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.62
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.68
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.00
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.16
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	12.02
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	10.39
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.24
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	4.03
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.27
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.98
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.10
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.61
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.79
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.