Gene detail

Detailed information of OS493_039548-T1 in Lophelia pertusa

Genomic Location: scaffold_1249:572...6236
NR annotation: KAJ7388143.1, hypothetical protein OS493_039548, partial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BI36	JNK1/MAPK8-associated membrane protein OS=Mus musculus OX=10090 GN=Jkamp PE=1 SV=2
Q9P055	JNK1/MAPK8-associated membrane protein OS=Homo sapiens OX=9606 GN=JKAMP PE=1 SV=4
G5EBX4	JNK1/MAPK8-associated membrane protein homolog OS=Caenorhabditis elegans OX=6239 GN=jamp-1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007430 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05571 all species →	JAMP	JNK1/MAPK8-associated membrane protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008485 all species →	Family	JNK1/MAPK8-associated membrane protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12740 all species →	JNK1/MAPK8-ASSOCIATED MEMBRANE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006986 all species →	Biological Process	response to unfolded protein	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0030433 all species →	Biological Process	obsolete ubiquitin-dependent ERAD pathway	Interproscan
GO:0031625 all species →	Molecular Function	ubiquitin protein ligase binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_039548-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_039548-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

105TPM > 0

7Conditions

24.6Max TPM

4.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	5.53	14.75
polyp at pH7 6	18	15	4.06	7.21
coral polyp · control treatment	16	16	6.52	20.57
coral polyp · oil and dispersant treatment	16	16	6.03	24.57
coral polyp · oil treatment	16	16	5.05	9.87
coral polyp · dispersant treatment	16	16	2.75	5.83
Polyp	10	9	4.38	10.25

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.75
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.36
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.88
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.87
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.60
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.58
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.23
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.22
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.72
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.40
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.35
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.13
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.11
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.03
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.92
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.13
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.34
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.21
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.75
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.64
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.32
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.10
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.09
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.91
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.86
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.70
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.52
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.18
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.92
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.14
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.10
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.70
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.57
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.33
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.53
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.18
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.96
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.52
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.15
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.29
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.18
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.97
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.70
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.41
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.17
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.22
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.15
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.95
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.57
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.04
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.60
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.24
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.53
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.45
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.33
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.76
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.59
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.33
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.15
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.24
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.82
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.50
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.31
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.07
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.87
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.57
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.57
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.92
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.91
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.81
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.51
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.18
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.54
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.34
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.01
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.43
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.80
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.36
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.40
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.58
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.83
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.10
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.95
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.39
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.29
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.27
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.00
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.59
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.34
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.34
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.50
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.39
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.23
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.10
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.91
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.75
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	10.25
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	5.30
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	5.08
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.99
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.84
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4.46
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.31
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3.29
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.23
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.