Gene detail

Detailed information of OS493_039563-T1 in Lophelia pertusa

Genomic Location: scaffold_1263:4371...8028
NR annotation: KAJ7375690.1, hypothetical protein OS493_039563, partial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5PQS7	Coiled-coil domain-containing protein 174 OS=Rattus norvegicus OX=10116 GN=Ccdc174 PE=2 SV=2
Q3U155	Coiled-coil domain-containing protein 174 OS=Mus musculus OX=10090 GN=Ccdc174 PE=2 SV=1
Q5ZIH9	Coiled-coil domain-containing protein 174 OS=Gallus gallus OX=9031 GN=CCDC174 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005143 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_039563-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR025066 all species →	Family	Coiled-coil domain-containing protein 174-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15885 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_039563-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_039563-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

69TPM > 0

7Conditions

15.3Max TPM

2.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	8	1.45	4.90
polyp at pH7 6	18	5	0.74	3.66
coral polyp · control treatment	16	12	3.97	8.21
coral polyp · oil and dispersant treatment	16	12	3.36	7.09
coral polyp · oil treatment	16	13	4.64	10.84
coral polyp · dispersant treatment	16	10	2.01	6.98
Polyp	10	9	4.78	15.32

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.90
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.83
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.60
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.25
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.01
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.91
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.66
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.00
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.66
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.86
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.76
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.35
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.71
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.21
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.96
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.22
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.44
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.40
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.84
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.80
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.74
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.70
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.66
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.50
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.02
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.09
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.03
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.97
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.09
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.91
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.19
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.05
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.91
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.67
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.01
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.57
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.25
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.84
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.94
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.92
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.05
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.05
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.51
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.59
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.31
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.30
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.52
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.17
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.15
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.96
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.98
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.11
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.22
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.44
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.31
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.42
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.14
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.01
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.60
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.91
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	15.32
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	9.68
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	9.07
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.29
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.77
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.76
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.08
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	2.05
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.78
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.