Gene detail

Detailed information of OS493_039570-T1 in Lophelia pertusa

Genomic Location: scaffold_1267:12052...12672
NR annotation: KAJ7388141.1, Sytl5p [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96C24	Synaptotagmin-like protein 4 OS=Homo sapiens OX=9606 GN=SYTL4 PE=1 SV=2
Q80T23	Synaptotagmin-like protein 5 OS=Mus musculus OX=10090 GN=Sytl5 PE=1 SV=1
Q8VHQ7	Synaptotagmin-like protein 4 OS=Rattus norvegicus OX=10116 GN=Sytl4 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000239 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00168 all species →	C2	C2 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000008 all species →	Domain	C2 domain	Interproscan
IPR035892 all species →	Homologous_superfamily	C2 domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45716 all species →	BITESIZE, ISOFORM I	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006887 all species →	Biological Process	exocytosis	Interproscan
GO:0042043 all species →	Molecular Function	neurexin family protein binding	Interproscan
GO:0070382 all species →	Cellular Component	exocytic vesicle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_039570-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_039570-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

54.0Max TPM

19.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	22.33	34.53
polyp at pH7 6	18	18	21.79	40.33
coral polyp · control treatment	16	16	25.79	50.52
coral polyp · oil and dispersant treatment	16	16	17.21	54.05
coral polyp · oil treatment	16	16	21.40	30.95
coral polyp · dispersant treatment	16	16	13.03	21.48
Polyp	10	10	11.21	17.93

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.53
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.68
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.46
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.57
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.20
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.14
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.63
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.56
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.29
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.70
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.26
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.86
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.05
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.63
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.97
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.64
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.47
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.26
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.33
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.22
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.21
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.70
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.16
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.99
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.12
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.57
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.06
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.41
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.37
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.30
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.00
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.36
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.91
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.06
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.56
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.98
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.52
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.44
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.87
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.09
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.27
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.47
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.37
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.86
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.38
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.34
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.27
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.86
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.07
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.79
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.15
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.84
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	54.05
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.08
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.65
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.32
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.64
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.43
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.42
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.22
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.18
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.76
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.63
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.94
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.36
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.43
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.79
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.48
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.95
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.67
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.75
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.66
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.25
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.17
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.12
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.95
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.87
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.05
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.06
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.39
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.50
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.26
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.07
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.68
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.48
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.44
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.39
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.95
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.82
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.55
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.71
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.47
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.14
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.95
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.80
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.64
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.59
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.17
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.03
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.35
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	17.93
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	17.61
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	14.73
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	14.58
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	12.25
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	10.77
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	8.89
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	6.13
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	5.39
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.80

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.