Gene detail

Detailed information of OS493_039607-T1 in Lophelia pertusa

Genomic Location: scaffold_1300:1254...3603
NR annotation: KAJ7369365.1, hypothetical protein OS493_039607, partial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000025 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051637 all species →	Family	Ankyrin repeat domain-containing protein 49	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24180 all species →	CYCLIN-DEPENDENT KINASE INHIBITOR 2C-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_039607-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_039607-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

120.5Max TPM

28.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	44.21	78.45
polyp at pH7 6	18	18	35.30	52.14
coral polyp · control treatment	16	16	26.14	91.84
coral polyp · oil and dispersant treatment	16	16	15.72	50.57
coral polyp · oil treatment	16	16	24.87	54.55
coral polyp · dispersant treatment	16	16	15.72	45.23
Polyp	10	10	34.74	120.50

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	78.45
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	69.93
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	62.49
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	57.68
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	50.66
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	50.36
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	49.28
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.71
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.94
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.37
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.37
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.08
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.45
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.92
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.07
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.10
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.97
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	52.14
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	51.30
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.18
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	49.87
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.91
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	47.00
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.85
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.30
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.93
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.61
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.32
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.27
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.06
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.98
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.91
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.13
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.69
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.91
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	91.84
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.08
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.95
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.14
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.26
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.02
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.79
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.69
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.49
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.52
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.02
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.37
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.53
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.02
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.94
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.56
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.57
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.67
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.03
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.09
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.45
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.06
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.43
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.47
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.19
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.51
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.21
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.25
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.83
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.06
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.47
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.14
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	54.55
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.59
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.10
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.51
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.76
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.14
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.48
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.59
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.28
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.64
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.60
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.60
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.94
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.50
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.66
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.06
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	45.23
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.02
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.76
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.14
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.84
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.03
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.14
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.63
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.37
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.79
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.38
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.00
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.14
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.10
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.30
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.72
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	120.50
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	95.09
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	36.98
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	27.84
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	23.62
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	11.96
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	9.17
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	7.89
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	7.25
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	7.16

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.