Gene detail

Detailed information of OS493_039625-T1 in Lophelia pertusa

Genomic Location: scaffold_1310:3910...9193
NR annotation: KAJ7381685.1, hypothetical protein OS493_039625, partial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A2VD33	Molybdenum cofactor sulfurase OS=Danio rerio OX=7955 GN=mocos PE=2 SV=2
Q14CH1	Molybdenum cofactor sulfurase OS=Mus musculus OX=10090 GN=Mocos PE=1 SV=1
Q96EN8	Molybdenum cofactor sulfurase OS=Homo sapiens OX=9606 GN=MOCOS PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007027 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03476 all species →	MOSC_N	MOSC N-terminal beta barrel domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005303 all species →	Domain	Molybdenum cofactor sulfurase, middle domain	Interproscan

PANTHER

No PANTHER signature was recorded for OS493_039625-T1 in Lophelia pertusa.

Gene Ontology

No Gene Ontology signature was recorded for OS493_039625-T1 in Lophelia pertusa.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_039625-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_039625-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

22.3Max TPM

6.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	6.10	9.49
polyp at pH7 6	18	17	6.65	12.34
coral polyp · control treatment	16	16	6.54	22.27
coral polyp · oil and dispersant treatment	16	16	6.77	12.77
coral polyp · oil treatment	16	16	6.60	12.45
coral polyp · dispersant treatment	16	16	5.68	12.24
Polyp	10	8	2.88	6.56

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.49
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.33
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.56
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.53
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.28
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.13
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.11
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.24
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.24
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.77
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.74
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.73
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.07
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.85
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.68
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.47
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.35
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.27
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.34
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.25
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.25
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.44
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.86
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.48
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.96
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.90
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.69
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.13
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.13
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.01
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.55
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.74
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.08
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.78
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.16
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.27
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.16
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.75
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.88
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.28
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.31
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.56
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.35
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.04
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.66
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.51
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.40
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.28
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.74
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.41
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.05
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.77
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.75
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.45
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.04
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.71
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.23
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.71
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.69
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.08
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.08
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.69
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.26
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.92
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.67
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.96
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.36
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.45
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.68
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.46
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.84
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.17
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.83
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.57
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.48
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.94
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.22
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.02
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.58
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.33
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.94
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.74
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.33
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.24
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.74
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.01
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.87
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.51
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.97
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.89
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.22
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.67
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.74
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.14
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.72
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.69
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.49
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.47
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.54
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	6.56
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	5.98
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	5.46
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	4.33
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	3.27
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.90
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.65
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.62
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.