Gene detail

Detailed information of OS493_039626-T1 in Lophelia pertusa

Genomic Location: scaffold_1310:9250...14534
NR annotation: KAJ7381686.1, hypothetical protein OS493_039626, partial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A2VD33	Molybdenum cofactor sulfurase OS=Danio rerio OX=7955 GN=mocos PE=2 SV=2
Q9N0E7	Molybdenum cofactor sulfurase OS=Bos taurus OX=9913 GN=MOCOS PE=2 SV=3
Q96EN8	Molybdenum cofactor sulfurase OS=Homo sapiens OX=9606 GN=MOCOS PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007189 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00266 all species →	Aminotran_5	Aminotransferase class-V	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000192 all species →	Domain	Aminotransferase class V domain	Interproscan
IPR015424 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan
IPR015421 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14237 all species →	MOLYBDOPTERIN COFACTOR SULFURASE MOSC	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008265 all species →	Molecular Function	molybdenum cofactor sulfurtransferase activity	Interproscan
GO:0043545 all species →	Biological Process	molybdopterin cofactor metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15631	ABA3; molybdenum cofactor sulfurtransferase	EC:2.8.1.9	Folate biosynthesis	ko00790	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_039626-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

20.2Max TPM

4.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	3.31	6.23
polyp at pH7 6	18	17	3.57	6.89
coral polyp · control treatment	16	16	6.20	20.19
coral polyp · oil and dispersant treatment	16	16	6.13	17.43
coral polyp · oil treatment	16	16	4.81	7.55
coral polyp · dispersant treatment	16	16	4.95	8.61
Polyp	10	8	1.94	6.36

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.23
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.30
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.50
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.20
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.03
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.57
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.48
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.41
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.00
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.96
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.89
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.86
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.70
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.50
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.39
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.13
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.11
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.33
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.89
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.11
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.41
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.98
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.12
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.96
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.84
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.70
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.60
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.38
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.23
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.13
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.12
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.09
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.72
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.03
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.86
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.19
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.66
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.01
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.00
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.51
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.42
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.96
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.72
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.12
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.51
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.51
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.41
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.31
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.47
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.20
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.12
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.43
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.99
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.82
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.56
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.07
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.34
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.44
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.75
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.63
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.36
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.25
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.07
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.91
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.06
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.79
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.68
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.55
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.04
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.69
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.47
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.99
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.79
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.87
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.42
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.28
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.26
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.22
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.16
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.06
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.32
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.81
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.12
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.61
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.91
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.78
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.40
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.39
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.99
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.92
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.16
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.81
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.44
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.39
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.63
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.48
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.46
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.78
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.11
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	6.36
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3.75
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.61
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	2.70
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.03
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.41
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.31
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.22
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.