Gene detail

Detailed information of OS493_039719-T1 in Lophelia pertusa

Genomic Location: scaffold_1397:1977...3701
NR annotation: KAJ7347657.1, TRAFAC class myosin-kinesin ATPase super [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0031234 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18597 all species →	SH3_19	Myosin X N-terminal SH3 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR040640 all species →	Domain	Myosin X, N-terminal SH3 domain	Interproscan

PANTHER

No PANTHER signature was detected for OS493_039719-T1. This gene does have a gene model — the search simply returned no hit.

Gene Ontology

No Gene Ontology signature was detected for OS493_039719-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_039719-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_039719-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

84TPM > 0

7Conditions

15.9Max TPM

2.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	12	2.58	6.58
polyp at pH7 6	18	9	2.07	5.60
coral polyp · control treatment	16	15	3.07	6.10
coral polyp · oil and dispersant treatment	16	14	3.79	8.65
coral polyp · oil treatment	16	15	2.29	6.40
coral polyp · dispersant treatment	16	14	4.97	15.91
Polyp	10	5	0.59	2.08

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.58
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.28
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.67
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.87
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.78
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.31
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.79
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.80
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.24
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.84
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.81
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.46
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.60
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.49
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.42
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.34
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.68
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.72
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.96
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.23
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.76
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.10
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.08
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.64
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.56
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.19
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.91
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.56
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.35
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.12
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.00
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.67
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.02
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.46
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.22
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.24
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.65
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.04
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.15
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.85
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.41
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.15
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.98
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.81
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.59
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.55
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.48
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.45
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.35
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.15
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.40
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.07
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.45
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.31
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.27
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.49
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.34
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.96
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.71
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.60
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.27
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.11
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.80
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.46
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.44
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.91
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.52
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.74
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.83
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.97
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.41
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.96
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.13
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.91
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.29
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.69
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.59
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.49
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.04
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.08
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.83
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.86
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	0.80
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.34
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.