Gene detail

Detailed information of OS493_039720-T1 in Lophelia pertusa

Genomic Location: scaffold_1397:8956...11491
NR annotation: KAJ7347658.1, hypothetical protein OS493_039720 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P22033	Methylmalonyl-CoA mutase, mitochondrial OS=Homo sapiens OX=9606 GN=MMUT PE=1 SV=4
Q5RFN2	Methylmalonyl-CoA mutase, mitochondrial OS=Pongo abelii OX=9601 GN=MMUT PE=2 SV=1
Q9GK13	Methylmalonyl-CoA mutase, mitochondrial OS=Bos taurus OX=9913 GN=MMUT PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004409 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01642 all species →	MM_CoA_mutase	Methylmalonyl-CoA mutase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016176 all species →	Homologous_superfamily	Cobalamin (vitamin B12)-dependent enzyme, catalytic	Interproscan
IPR006099 all species →	Domain	Methylmalonyl-CoA mutase, alpha/beta chain, catalytic	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48101 all species →	METHYLMALONYL-COA MUTASE, MITOCHONDRIAL-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004494 all species →	Molecular Function	methylmalonyl-CoA mutase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0019678 all species →	Biological Process	propionate metabolic process, methylmalonyl pathway	Interproscan
GO:0031419 all species →	Molecular Function	cobalamin binding	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0016866 all species →	Molecular Function	intramolecular transferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_039720-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_039720-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

90TPM > 0

7Conditions

22.4Max TPM

2.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	11	1.49	4.03
polyp at pH7 6	18	13	2.03	3.98
coral polyp · control treatment	16	16	3.42	7.70
coral polyp · oil and dispersant treatment	16	15	5.13	22.43
coral polyp · oil treatment	16	14	2.17	6.67
coral polyp · dispersant treatment	16	15	4.89	21.44
Polyp	10	6	0.94	2.62

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.03
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.69
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.01
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.45
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.43
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.24
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.11
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.02
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.73
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.66
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.37
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.98
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.75
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.38
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.36
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.36
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.22
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.74
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.44
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.35
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.29
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.10
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.93
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.72
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.70
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.49
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.48
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.34
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.01
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.86
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.72
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.95
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.38
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.20
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.98
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.97
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.95
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.19
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.93
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.55
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.43
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.21
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.97
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.84
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.30
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.41
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.58
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.13
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.07
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.80
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.68
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.39
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.83
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.37
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.13
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.67
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.15
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.42
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.62
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.46
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.44
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.19
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.90
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.78
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.76
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.75
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.16
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.94
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.54
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.44
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.44
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.49
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.92
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.70
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.45
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.05
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.63
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.61
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.38
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.21
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.94
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.00
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.66
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.35
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.62
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	2.11
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.72
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	1.39
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.85
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.73
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.