Gene detail

Detailed information of OS493_039771-T1 in Lophelia pertusa

Genomic Location: scaffold_1434:1031...8932
NR annotation: KAJ7312348.1, Lactation elevated protein 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8WV93	AFG1-like ATPase OS=Homo sapiens OX=9606 GN=AFG1L PE=1 SV=2
Q32PX9	AFG1-like ATPase OS=Rattus norvegicus OX=10116 GN=Afg1l PE=2 SV=1
Q3V384	AFG1-like ATPase OS=Mus musculus OX=10090 GN=Afg1l PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001828 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03969 all species →	AFG1_ATPase	AFG1-like ATPase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005654 all species →	Family	ATPase, AFG1-like	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12169 all species →	ATPASE N2B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18798	AFG1, LACE1; peroxisome-assembly ATPase	EC:3.6.4.7	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_039771-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

106TPM > 0

7Conditions

16.1Max TPM

4.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	3.50	10.92
polyp at pH7 6	18	16	4.52	9.87
coral polyp · control treatment	16	16	5.20	9.78
coral polyp · oil and dispersant treatment	16	16	7.95	16.12
coral polyp · oil treatment	16	16	4.47	9.79
coral polyp · dispersant treatment	16	16	6.26	14.92
Polyp	10	9	1.66	5.90

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.92
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.49
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.75
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.28
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.74
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.48
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.07
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.06
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.78
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.44
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.44
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.23
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.16
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.12
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.88
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.84
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.35
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.87
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.50
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.38
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.42
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.60
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.59
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.07
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.98
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.98
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.72
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.62
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.23
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.19
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.53
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.33
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.26
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.78
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.98
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.12
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.76
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.65
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.56
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.17
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.86
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.59
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.54
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.43
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.09
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.02
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.09
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.68
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.88
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.12
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.73
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.18
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.56
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.96
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.20
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.62
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.08
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.52
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.39
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.24
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.20
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.14
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.69
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.64
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.93
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.79
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.75
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.87
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.11
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.73
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.64
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.44
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.11
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.95
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.22
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.57
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.31
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.15
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.96
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.69
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.26
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.92
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.13
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.89
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.66
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.84
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.61
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.78
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.69
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.24
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.05
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.05
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.30
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.99
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.55
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.37
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.15
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	5.90
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.76
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.63
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.34
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.17
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.09
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.05
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.83
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.82
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.