Gene detail

Detailed information of OS493_039852-T1 in Lophelia pertusa

Genomic Location: scaffold_1487:796...10321
NR annotation: KAJ7347639.1, Pantothenate kinase 4 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q923S8	4'-phosphopantetheine phosphatase OS=Rattus norvegicus OX=10116 GN=Pank4 PE=1 SV=1
Q80YV4	4'-phosphopantetheine phosphatase OS=Mus musculus OX=10090 GN=Pank4 PE=1 SV=2
Q9NVE7	4'-phosphopantetheine phosphatase OS=Homo sapiens OX=9606 GN=PANK4 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001784 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03630 all species →	Fumble	Fumble	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043129 all species →	Homologous_superfamily	ATPase, nucleotide binding domain	Interproscan
IPR004567 all species →	Family	Type II pantothenate kinase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12280 all species →	PANTOTHENATE KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004594 all species →	Molecular Function	pantothenate kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0015937 all species →	Biological Process	coenzyme A biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_039852-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_039852-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

105TPM > 0

7Conditions

12.0Max TPM

2.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	2.40	4.03
polyp at pH7 6	18	16	2.28	3.27
coral polyp · control treatment	16	16	3.69	7.00
coral polyp · oil and dispersant treatment	16	16	2.84	12.01
coral polyp · oil treatment	16	16	3.55	5.87
coral polyp · dispersant treatment	16	15	2.82	6.66
Polyp	10	9	1.73	3.63

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.03
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.74
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.44
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.36
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.96
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.84
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.69
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.68
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.63
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.61
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.35
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.20
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.19
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.84
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.61
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.56
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.45
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.27
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.22
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.07
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.98
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.93
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.86
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.81
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.64
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.46
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.37
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.33
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.19
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.12
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.04
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.00
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.69
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.00
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.96
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.46
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.98
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.74
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.55
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.91
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.62
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.54
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.38
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.37
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.13
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.13
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.70
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.47
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.13
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.01
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.68
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.09
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.89
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.85
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.67
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.24
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.21
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.11
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.04
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.00
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.64
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.54
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.37
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.33
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.74
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.87
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.19
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.02
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.93
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.20
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.90
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.73
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.33
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.33
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.19
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.04
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.77
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.34
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.23
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.88
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.83
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.66
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.53
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.39
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.25
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.61
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.34
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.27
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.89
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.62
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.33
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.69
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.61
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.39
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.92
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.56
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3.63
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.53
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	3.21
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.36
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.43
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.31
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.79
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.62
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.41
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.