Detailed information of OS493_039949-T1 in Lophelia pertusa

Genomic Location: scaffold_1586:94...1111
NR annotation: KAJ7381642.1, THO complex subunit 5, partial [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6DFL5THO complex subunit 5 homolog A OS=Xenopus laevis OX=8355 GN=thoc5-a PE=1 SV=1
Q28DG8THO complex subunit 5 homolog OS=Xenopus tropicalis OX=8364 GN=thoc5 PE=2 SV=1
Q5ZJK1THO complex subunit 5 homolog OS=Gallus gallus OX=9031 GN=THOC5 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005018 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF09766
all species →		FmiP_Thoc5Fms-interacting protein/Thoc5FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR019163
all species →		FamilyTHO complex, subunit 5Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13375
all species →		FMS INTERACTING PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000445
all species →		Cellular ComponentTHO complex part of transcription export complexInterproscan
GO:0003729
all species →		Molecular FunctionmRNA bindingInterproscan
GO:0006406
all species →		Biological ProcessmRNA export from nucleusInterproscan
GO:0032786
all species →		Biological Processpositive regulation of DNA-templated transcription, elongationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_039949-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_039949-T1 global co-expression network
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