Gene detail

Detailed information of OS493_039992-T1 in Lophelia pertusa

Genomic Location: scaffold_1622:1757...7047
NR annotation: KAJ7381632.1, Unconventional myosin-X, partial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P79114	Unconventional myosin-X OS=Bos taurus OX=9913 GN=MYO10 PE=1 SV=1
D3ZJP6	Unconventional myosin-X OS=Rattus norvegicus OX=10116 GN=Myo10 PE=1 SV=1
F8VQB6	Unconventional myosin-X OS=Mus musculus OX=10090 GN=Myo10 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002873 (this species only) · gene tree & orthology

Pfam domain

No Pfam domain signature was recorded for OS493_039992-T1 in Lophelia pertusa.

InterPro

InterPro term	Type	Description	Source
IPR051724 all species →	Family	Actin-based Motor Myosin	Interproscan
IPR038185 all species →	Homologous_superfamily	MyTH4 domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46049 all species →	AGAP003327-PA	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for OS493_039992-T1 in Lophelia pertusa.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_039992-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_039992-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

62TPM > 0

7Conditions

6.3Max TPM

1.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	3	0.62	5.28
polyp at pH7 6	18	4	1.12	6.25
coral polyp · control treatment	16	13	1.17	3.25
coral polyp · oil and dispersant treatment	16	13	1.40	2.98
coral polyp · oil treatment	16	10	0.78	2.02
coral polyp · dispersant treatment	16	14	1.21	4.52
Polyp	10	5	1.02	3.05

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.28
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.55
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.39
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.25
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.36
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.10
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.50
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.25
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.14
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.00
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.82
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.49
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.36
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.13
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.09
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.06
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.97
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.83
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.81
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.72
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.98
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.80
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.10
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.10
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.93
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.93
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.71
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.69
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.47
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.17
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.95
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.93
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.70
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.02
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.84
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.61
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.59
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.23
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.08
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.04
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.81
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.65
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.56
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.52
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.69
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.32
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.28
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.25
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.16
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.11
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.08
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.01
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.93
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.78
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.50
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.39
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.33
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3.05
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	2.64
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.04
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.27
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.19
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.