Gene detail

Detailed information of OS493_040036-T1 in Lophelia pertusa

Genomic Location: scaffold_1670:1316...3508
NR annotation: KAJ7381627.1, hypothetical protein OS493_040036 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7ZTY6	Integrator complex subunit 15 OS=Danio rerio OX=7955 GN=ints15 PE=2 SV=2
Q8BGA7	Integrator complex subunit 15 OS=Mus musculus OX=10090 GN=Ints15 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005798 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14964 all species →	INTS15	Integrator complex subunit 15	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027844 all species →	Family	Integrator complex subunit 15	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14540 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_040036-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_040036-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_040036-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

106TPM > 0

7Conditions

11.4Max TPM

3.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	3.28	6.14
polyp at pH7 6	18	18	3.42	6.20
coral polyp · control treatment	16	16	4.33	11.43
coral polyp · oil and dispersant treatment	16	15	2.27	7.82
coral polyp · oil treatment	16	16	3.49	9.80
coral polyp · dispersant treatment	16	14	2.45	4.64
Polyp	10	9	2.15	3.24

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.14
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.46
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.94
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.81
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.72
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.66
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.98
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.80
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.46
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.45
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.23
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.17
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.02
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.01
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.85
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.83
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.82
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.62
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.20
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.74
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.40
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.39
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.16
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.86
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.68
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.18
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.98
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.85
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.73
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.64
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.17
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.14
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.10
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.08
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.28
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.43
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.82
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.64
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.85
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.51
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.34
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.05
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.47
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.30
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.15
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.52
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.25
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.96
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.76
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.59
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.55
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.82
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.35
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.81
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.59
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.53
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.45
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.35
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.33
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.98
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.68
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.54
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.32
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.05
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.76
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.76
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.80
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.81
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.92
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.78
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.73
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.68
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.54
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.51
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.15
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.98
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.55
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.42
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.53
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.35
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.22
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.85
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.64
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.40
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.20
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.07
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.04
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.35
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.18
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.26
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.21
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.17
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.35
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.32
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.08
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.85
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.24
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.03
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.69
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.41
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.20
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	2.19
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.05
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.84
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.82
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.