Gene detail

Detailed information of OS493_040038-T1 in Lophelia pertusa

Genomic Location: scaffold_1671:2055...6464
NR annotation: KAJ7375616.1, Mitochondrial GTPase, partial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
E3TDS3	Mitochondrial ribosome-associated GTPase 1 OS=Ictalurus punctatus OX=7998 GN=mtg1 PE=2 SV=1
Q4PS77	Mitochondrial ribosome-associated GTPase 1 OS=Bos taurus OX=9913 GN=MTG1 PE=2 SV=2
Q9BT17	Mitochondrial ribosome-associated GTPase 1 OS=Homo sapiens OX=9606 GN=MTG1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004030 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01926 all species →	MMR_HSR1	50S ribosome-binding GTPase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR006073 all species →	Domain	GTP binding domain	Interproscan
IPR023179 all species →	Homologous_superfamily	GTP-binding protein, orthogonal bundle domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45782 all species →	MITOCHONDRIAL RIBOSOME-ASSOCIATED GTPASE 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0032543 all species →	Biological Process	mitochondrial translation	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_040038-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_040038-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

100TPM > 0

7Conditions

17.9Max TPM

2.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	14	1.61	4.29
polyp at pH7 6	18	13	1.73	4.26
coral polyp · control treatment	16	16	2.72	7.07
coral polyp · oil and dispersant treatment	16	15	1.65	4.20
coral polyp · oil treatment	16	16	3.00	7.27
coral polyp · dispersant treatment	16	16	1.74	5.30
Polyp	10	10	7.53	17.87

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.29
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.82
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.01
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.71
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.28
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.97
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.83
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.75
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.46
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.42
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.34
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.34
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.30
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.50
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.26
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.09
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.13
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.92
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.84
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.57
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.49
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.11
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.70
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.39
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.34
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.31
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.95
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.07
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.18
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.19
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.05
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.79
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.68
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.65
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.59
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.25
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.97
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.86
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.82
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.69
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.55
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.31
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.86
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.20
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.70
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.15
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.38
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.94
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.64
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.45
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.34
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.26
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.11
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.96
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.93
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.88
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.86
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.59
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.27
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.61
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.14
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.99
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.06
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.19
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.12
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.51
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.89
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.84
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.78
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.52
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.48
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.47
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.35
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.74
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.30
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.86
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.69
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.52
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.44
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.11
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.48
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.38
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.36
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.23
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.05
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.02
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.79
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.67
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.57
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.39
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	17.87
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	17.55
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	9.21
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	6.87
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	6.21
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	6.13
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3.43
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.22
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	3.08
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.71

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.