Gene detail

Detailed information of OS493_040190-T1 in Lophelia pertusa

Genomic Location: scaffold_1850:2216...9164
NR annotation: KAJ7381604.1, ATPase asna1, partial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A7RQM5	ATPase ASNA1 homolog OS=Nematostella vectensis OX=45351 GN=v1g161623 PE=3 SV=1
Q0IIZ2	ATPase GET3 OS=Xenopus tropicalis OX=8364 GN=get3 PE=2 SV=1
Q6IQE5	ATPase GET3 OS=Danio rerio OX=7955 GN=get3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006185 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02374 all species →	ArsA_ATPase	Anion-transporting ATPase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016300 all species →	Family	Arsenical pump ATPase, ArsA/GET3	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR025723 all species →	Domain	Anion-transporting ATPase-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10803 all species →	ARSENICAL PUMP-DRIVING ATPASE ARSENITE-TRANSLOCATING ATPASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006620 all species →	Biological Process	post-translational protein targeting to endoplasmic reticulum membrane	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0043529 all species →	Cellular Component	GET complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00022	HADH; 3-hydroxyacyl-CoA dehydrogenase	EC:1.1.1.35	Caprolactam degradation	ko00930	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_040190-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

99TPM > 0

7Conditions

16.5Max TPM

5.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	13	2.81	7.26
polyp at pH7 6	18	14	2.94	9.49
coral polyp · control treatment	16	16	7.39	16.51
coral polyp · oil and dispersant treatment	16	15	6.51	13.66
coral polyp · oil treatment	16	16	6.38	12.89
coral polyp · dispersant treatment	16	16	3.89	7.39
Polyp	10	9	5.84	10.33

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.26
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.25
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.70
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.90
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.48
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.16
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.00
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.93
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.62
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.55
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.16
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.94
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.62
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.49
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.02
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.67
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.18
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.83
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.47
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.26
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.71
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.66
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.57
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.49
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.18
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.83
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.55
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.51
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.96
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.90
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.63
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.13
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.88
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.67
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.61
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.83
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.53
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.50
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.63
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.59
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.31
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.55
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.09
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.66
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.60
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.48
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.09
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.29
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.21
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.92
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.31
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.02
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.61
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.10
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.81
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.18
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.30
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.58
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.89
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.70
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.24
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.60
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.93
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.80
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.58
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.05
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.72
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.65
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.59
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.74
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.01
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.30
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.02
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.24
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.39
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.60
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.57
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.88
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.00
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.31
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.78
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.65
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.34
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.29
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.26
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.98
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.90
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.89
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.49
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.90
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	10.33
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	10.15
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	7.70
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	7.20
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	6.79
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	6.16
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.33
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	3.06
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.67
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.