Gene detail

Detailed information of OS493_040252-T1 in Lophelia pertusa

Genomic Location: scaffold_1943:5448...6761
NR annotation: KAJ7346450.1, glucosyltransferase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5I7T1	Dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase OS=Homo sapiens OX=9606 GN=ALG10B PE=1 SV=2
O88788	Dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase OS=Rattus norvegicus OX=10116 GN=Alg10b PE=1 SV=1
Q5BKT4	Dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase OS=Homo sapiens OX=9606 GN=ALG10 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008052 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04922 all species →	DIE2_ALG10	DIE2/ALG10 family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016900 all species →	Family	Alpha-2-glucosyltransferase Alg10	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12989 all species →	ALPHA-1,2-GLUCOSYLTRANSFERASE ALG10	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0006487 all species →	Biological Process	protein N-linked glycosylation	Interproscan
GO:0006488 all species →	Biological Process	dolichol-linked oligosaccharide biosynthetic process	Interproscan
GO:0106073 all species →	Molecular Function	dolichyl pyrophosphate Glc2Man9GlcNAc2 alpha-1,2-glucosyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_040252-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_040252-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

91TPM > 0

7Conditions

3.3Max TPM

1.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	12	0.47	1.83
polyp at pH7 6	18	11	0.40	1.27
coral polyp · control treatment	16	16	1.50	3.29
coral polyp · oil and dispersant treatment	16	15	1.19	2.56
coral polyp · oil treatment	16	16	1.72	3.22
coral polyp · dispersant treatment	16	14	0.71	2.33
Polyp	10	7	0.67	1.64

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.83
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.29
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.16
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.07
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.91
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.50
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.49
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.38
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.35
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.23
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.17
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.14
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.27
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.18
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.84
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.77
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.73
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.48
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.47
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.43
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.42
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.39
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.30
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.29
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.66
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.15
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.14
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.01
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.84
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.66
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.55
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.36
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.20
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.19
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.73
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.67
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.65
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.64
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.34
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.56
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.22
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.96
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.88
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.64
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.58
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.33
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.32
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.11
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.81
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.80
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.53
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.53
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.50
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.32
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.22
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.14
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.94
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.50
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.14
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.10
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.72
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.50
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.46
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.39
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.29
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.00
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.87
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.85
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.79
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.65
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.33
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.40
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.21
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.12
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.00
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.82
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.81
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.65
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.44
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.41
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.39
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.31
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.22
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.21
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.64
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.49
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	1.14
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	0.89
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	0.83
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.55
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.18
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.