Detailed information of OS493_040279-T1 in Lophelia pertusa

Genomic Location: scaffold_1981:2987...7701
NR annotation: KAJ7388032.1, Pre-mRNA-processing-splicing factor 8 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6P2Q9Pre-mRNA-processing-splicing factor 8 OS=Homo sapiens OX=9606 GN=PRPF8 PE=1 SV=2
Q99PV0Pre-mRNA-processing-splicing factor 8 OS=Mus musculus OX=10090 GN=Prpf8 PE=1 SV=2
Q9SSD2Pre-mRNA-processing-splicing factor 8A OS=Arabidopsis thaliana OX=3702 GN=PRP8A PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004404 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF12134
all species →		PRP8_domainIVPRP8 domain IV coreDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR043173
all species →		Homologous_superfamilyPrp8 RNase domain IV, fingers regionInterproscan
IPR012337
all species →		Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR021983
all species →		DomainPRP8 domain IV coreInterproscan
IPR043172
all species →		Homologous_superfamilyPrp8 RNase domain IV, palm regionInterproscan
IPR027652
all species →		FamilyPre-mRNA-processing-splicing factor 8Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11140
all species →		PRE-MRNA SPLICING FACTOR PRP8Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000244
all species →		Biological Processspliceosomal tri-snRNP complex assemblyInterproscan
GO:0000398
all species →		Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0005681
all species →		Cellular Componentspliceosomal complexInterproscan
GO:0005682
all species →		Cellular ComponentU5 snRNPInterproscan
GO:0017070
all species →		Molecular FunctionU6 snRNA bindingInterproscan
GO:0030619
all species →		Molecular FunctionU1 snRNA bindingInterproscan
GO:0030620
all species →		Molecular FunctionU2 snRNA bindingInterproscan
GO:0030623
all species →		Molecular FunctionU5 snRNA bindingInterproscan
GO:0071013
all species →		Cellular Componentcatalytic step 2 spliceosomeInterproscan
GO:0097157
all species →		Molecular Functionpre-mRNA intronic bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_040279-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_040279-T1 global co-expression network
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