Detailed information of OS493_040285-T1 in Lophelia pertusa

Genomic Location: scaffold_1992:1968...9003
NR annotation: KAJ7388030.1, Mediator of RNA polymerase II transcription subunit 13-like [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6JPI3Mediator of RNA polymerase II transcription subunit 13-like OS=Mus musculus OX=10090 GN=Med13l PE=1 SV=2
Q71F56Mediator of RNA polymerase II transcription subunit 13-like OS=Homo sapiens OX=9606 GN=MED13L PE=1 SV=1
A2VCZ5Mediator of RNA polymerase II transcription subunit 13-like OS=Danio rerio OX=7955 GN=zgc:153454 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003809 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF06333
all species →		Med13_CMediator complex subunit 13 C-terminal domainDomainInterproscan
PF18296
all species →		MID_MedPIWIMID domain of medPIWIDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR009401
all species →		DomainMediator complex subunit Med13, C-terminalInterproscan
IPR051139
all species →		FamilyMediator complex subunit 13Interproscan
IPR041285
all species →		DomainMID domain of medPIWIInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR48249
all species →		MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 13Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003712
all species →		Molecular Functiontranscription coregulator activityInterproscan
GO:0006357
all species →		Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0016592
all species →		Cellular Componentmediator complexInterproscan
GO:0003713
all species →		Molecular Functiontranscription coactivator activityInterproscan
GO:0045944
all species →		Biological Processpositive regulation of transcription by RNA polymerase IIInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_040285-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_040285-T1 global co-expression network
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