Detailed information of OS493_040308-T1 in Lophelia pertusa

Genomic Location: scaffold_2039:4810...7311
NR annotation: KAJ7346440.1, hypothetical protein OS493_040308 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P41250Glycine--tRNA ligase OS=Homo sapiens OX=9606 GN=GARS1 PE=1 SV=3
Q5I0G4Glycine--tRNA ligase OS=Rattus norvegicus OX=10116 GN=Gars1 PE=1 SV=2
Q5RBL1Glycine--tRNA ligase OS=Pongo abelii OX=9601 GN=GARS1 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004597 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF03129
all species →		HGTP_anticodonAnticodon binding domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036621
all species →		Homologous_superfamilyAnticodon-binding domain superfamilyInterproscan
IPR027031
all species →		FamilyGlycyl-tRNA synthetase/DNA polymerase subunit gamma-2Interproscan
IPR004154
all species →		DomainAnticodon-bindingInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10745
all species →		GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE SUBUNIT GAMMA-2Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004820
all species →		Molecular Functionglycine-tRNA ligase activityInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0005739
all species →		Cellular ComponentmitochondrionInterproscan
GO:0006426
all species →		Biological Processglycyl-tRNA aminoacylationInterproscan
GO:0070150
all species →		Biological Processmitochondrial glycyl-tRNA aminoacylationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_040308-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_040308-T1 global co-expression network
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