Gene detail

Detailed information of OS493_040376-T1 in Lophelia pertusa

Genomic Location: scaffold_2131:195...5686
NR annotation: KAJ7388015.1, hypothetical protein OS493_040376, partial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7G192	Indole-3-acetaldehyde oxidase OS=Arabidopsis thaliana OX=3702 GN=AAO2 PE=1 SV=2
P47990	Xanthine dehydrogenase/oxidase OS=Gallus gallus OX=9031 GN=XDH PE=1 SV=1
Q54FB7	Xanthine dehydrogenase OS=Dictyostelium discoideum OX=44689 GN=xdh PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000566 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01315 all species →	Ald_Xan_dh_C	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain	Domain	Interproscan
PF03450 all species →	CO_deh_flav_C	CO dehydrogenase flavoprotein C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000674 all species →	Domain	Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead	Interproscan
IPR036856 all species →	Homologous_superfamily	Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily	Interproscan
IPR016208 all species →	Family	Aldehyde oxidase/xanthine dehydrogenase-like	Interproscan
IPR036683 all species →	Homologous_superfamily	CO dehydrogenase flavoprotein, C-terminal domain superfamily	Interproscan
IPR005107 all species →	Domain	CO dehydrogenase flavoprotein, C-terminal	Interproscan
IPR037165 all species →	Homologous_superfamily	Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11908 all species →	XANTHINE DEHYDROGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005506 all species →	Molecular Function	iron ion binding	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_040376-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_040376-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

106TPM > 0

7Conditions

19.8Max TPM

8.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	9.12	18.06
polyp at pH7 6	18	16	9.27	15.76
coral polyp · control treatment	16	16	8.67	15.25
coral polyp · oil and dispersant treatment	16	16	6.43	15.87
coral polyp · oil treatment	16	16	9.61	19.80
coral polyp · dispersant treatment	16	16	7.43	16.22
Polyp	10	8	4.18	8.34

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.06
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.31
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.69
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.78
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.77
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.98
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.18
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.98
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.97
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.78
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.57
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.23
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.19
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.16
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.10
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.65
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.37
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.37
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.76
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.18
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.39
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.79
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.74
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.43
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.39
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.24
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.05
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.02
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.33
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.67
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.36
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.14
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.77
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.57
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.25
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.61
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.43
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.33
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.10
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.11
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.67
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.81
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.82
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.66
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.18
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.42
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.66
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.09
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.99
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.61
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.87
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.07
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.02
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.61
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.60
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.40
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.60
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.62
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.22
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.18
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.15
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.36
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.58
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.56
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.25
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.83
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.80
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.31
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.54
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.49
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.00
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.67
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.05
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.17
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.92
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.48
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.54
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.62
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.40
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.38
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.22
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.10
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.22
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.55
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.44
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.48
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.32
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.07
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.35
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.24
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.16
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.59
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.41
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.23
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.76
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.96
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.39
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.73
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	8.34
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	7.35
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	6.60
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.64
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	5.16
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4.55
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.34
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.78
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.