Gene detail

Detailed information of OS493_040378-T1 in Lophelia pertusa

Genomic Location: scaffold_2139:1986...8102
NR annotation: KAJ7375565.1, hypothetical protein OS493_040378, partial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q54SV3	Probable allantoinase 1 OS=Dictyostelium discoideum OX=44689 GN=allB1 PE=3 SV=1
P40757	Allantoinase, mitochondrial OS=Aquarana catesbeiana OX=8400 GN=ALN PE=1 SV=1
P32375	Allantoinase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DAL1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009643 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01979 all species →	Amidohydro_1	Amidohydrolase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032466 all species →	Homologous_superfamily	Metal-dependent hydrolase	Interproscan
IPR011059 all species →	Homologous_superfamily	Metal-dependent hydrolase, composite domain superfamily	Interproscan
IPR050138 all species →	Family	Dihydroorotase/Allantoinase Hydrolase	Interproscan
IPR006680 all species →	Domain	Amidohydrolase-related	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43668 all species →	ALLANTOINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016810 all species →	Molecular Function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	Interproscan
GO:0004038 all species →	Molecular Function	allantoinase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006145 all species →	Biological Process	purine nucleobase catabolic process	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_040378-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_040378-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

101TPM > 0

7Conditions

11.7Max TPM

4.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	16	3.68	5.84
polyp at pH7 6	18	15	4.18	9.74
coral polyp · control treatment	16	16	5.64	11.70
coral polyp · oil and dispersant treatment	16	16	4.76	10.74
coral polyp · oil treatment	16	16	4.74	8.59
coral polyp · dispersant treatment	16	14	4.55	11.23
Polyp	10	8	1.75	4.17

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.84
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.42
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.85
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.84
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.79
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.58
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.35
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.28
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.21
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.09
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.05
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.76
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.48
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.84
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.46
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.43
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.74
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.94
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.71
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.25
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.55
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.54
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.95
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.37
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.30
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.08
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.77
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.49
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.92
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.89
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.66
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.70
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.28
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.84
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.16
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.80
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.29
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.28
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.28
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.04
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.70
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.47
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.32
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.17
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.60
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.58
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.67
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.74
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.71
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.64
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.24
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.11
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.51
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.80
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.37
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.17
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.86
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.12
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.12
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.86
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.84
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.64
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.49
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.59
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.25
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.98
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.81
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.86
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.37
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.67
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.14
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.06
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.68
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.14
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.63
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.26
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.87
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.74
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.71
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.23
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.06
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.37
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.89
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.19
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.05
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.10
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.79
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.70
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.58
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.10
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.87
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.28
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.54
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	4.17
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.50
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.50
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.11
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.57
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.41
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.32
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.90
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.