Gene detail

Detailed information of OS493_040414-T1 in Lophelia pertusa

Genomic Location: scaffold_2217:1328...3517
NR annotation: KAJ7375561.1, hypothetical protein OS493_040414, partial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009996 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13499 all species →	EF-hand_7	EF-hand domain pair	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR015757 all species →	Family	Calcineurin B protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45942 all species →	PROTEIN PHOSPATASE 3 REGULATORY SUBUNIT B ALPHA ISOFORM TYPE 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005955 all species →	Cellular Component	calcineurin complex	Interproscan
GO:0006470 all species →	Biological Process	protein dephosphorylation	Interproscan
GO:0008597 all species →	Molecular Function	calcium-dependent protein serine/threonine phosphatase regulator activity	Interproscan
GO:0019902 all species →	Molecular Function	phosphatase binding	Interproscan
GO:0097720 all species →	Biological Process	calcineurin-mediated signaling	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_040414-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_040414-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

94TPM > 0

7Conditions

17.8Max TPM

2.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	13	3.66	10.54
polyp at pH7 6	18	13	3.17	7.54
coral polyp · control treatment	16	15	2.74	7.66
coral polyp · oil and dispersant treatment	16	16	2.61	17.81
coral polyp · oil treatment	16	14	2.55	5.09
coral polyp · dispersant treatment	16	13	1.06	2.90
Polyp	10	10	3.28	8.79

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.54
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.83
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.04
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.39
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.87
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.29
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.26
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.04
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.46
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.27
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.54
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.78
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.52
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.54
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.54
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.31
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.15
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.58
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.18
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.99
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.91
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.89
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.62
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.89
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.82
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.70
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.66
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.85
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.49
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.09
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.94
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.58
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.46
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.34
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.29
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.25
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.82
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.69
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.52
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.04
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.79
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.81
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.53
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.11
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.03
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.37
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.86
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.58
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.45
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.29
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.29
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.13
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.05
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.95
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.72
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.47
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.19
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.09
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.08
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.00
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.46
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.15
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.11
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.85
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.77
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.76
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.58
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.39
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.34
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.46
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.77
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.90
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.22
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.95
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.83
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.81
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.25
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.96
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.93
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.83
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.75
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.70
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.70
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.11
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	8.79
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.76
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.78
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3.65
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.07
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.98
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.94
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.41
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.21
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.17

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.