Gene detail

Detailed information of OS493_040434-T1 in Lophelia pertusa

Genomic Location: scaffold_2257:373...1382
NR annotation: KAJ7388007.1, Peroxisomal membrane protein PMP30B, partial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Z211	Peroxisomal membrane protein 11A OS=Mus musculus OX=10090 GN=Pex11a PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008614 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05648 all species →	PEX11	Peroxisomal biogenesis factor 11 (PEX11)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008733 all species →	Family	Peroxisomal biogenesis factor 11	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12652 all species →	PEROXISOMAL BIOGENESIS FACTOR 11	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005778 all species →	Cellular Component	peroxisomal membrane	Interproscan
GO:0016559 all species →	Biological Process	peroxisome fission	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13352	PEX11B; peroxin-11B	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_040434-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

71.7Max TPM

12.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	6.80	13.66
polyp at pH7 6	18	17	7.68	12.76
coral polyp · control treatment	16	16	12.79	43.43
coral polyp · oil and dispersant treatment	16	16	25.47	71.74
coral polyp · oil treatment	16	16	8.87	29.97
coral polyp · dispersant treatment	16	16	16.71	46.38
Polyp	10	10	6.68	26.72

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.66
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.64
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.81
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.70
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.44
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.15
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.00
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.16
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.00
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.89
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.88
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.86
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.34
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.10
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.66
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.25
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.22
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.70
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.76
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.10
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.60
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.44
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.76
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.58
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.05
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.65
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.77
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.72
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.10
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.92
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.93
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.13
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.94
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.62
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.08
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.43
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.95
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.38
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.23
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.74
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.47
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.33
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.16
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.07
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.87
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.84
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.58
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.46
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.59
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.68
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.87
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	71.74
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	69.58
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.06
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.62
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.30
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.61
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.16
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.13
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.23
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.81
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.11
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.43
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.83
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.43
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.34
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.15
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.97
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.76
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.01
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.39
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.98
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.45
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.89
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.77
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.19
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.54
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.45
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.69
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.29
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.19
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.04
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.34
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.38
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.73
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.46
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.57
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.18
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.85
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.94
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.60
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.55
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.28
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.05
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.06
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.02
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.72
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.19
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.74
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	26.72
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	10.07
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	8.27
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	7.10
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.89
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	3.82
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	1.73
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.60
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.43
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.16

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.