Gene detail

Detailed information of OS493_040484-T1 in Lophelia pertusa

Genomic Location: scaffold_2339:5510...7520
NR annotation: KAJ7343693.1, hypothetical protein OS493_040484 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q68F18	Mitoferrin-2B OS=Xenopus laevis OX=8355 GN=slc25a28-b PE=2 SV=1
Q6GLJ0	Mitoferrin-2A OS=Xenopus laevis OX=8355 GN=slc25a28-a PE=2 SV=1
Q23125	Mitoferrin OS=Caenorhabditis elegans OX=6239 GN=mfn-1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006294 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00153 all species →	Mito_carr	Mitochondrial carrier protein	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018108 all species →	Repeat	Mitochondrial substrate/solute carrier	Interproscan
IPR023395 all species →	Homologous_superfamily	Mitochondrial carrier domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45758 all species →	MITOFERRIN-1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0015093 all species →	Molecular Function	ferrous iron transmembrane transporter activity	Interproscan
GO:0031966 all species →	Cellular Component	mitochondrial membrane	Interproscan
GO:0048250 all species →	Biological Process	iron import into the mitochondrion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15113	SLC25A28_37, MFRN; solute carrier family 25 (mitochondrial iron transporter), member 28/37	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_040484-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

112.0Max TPM

44.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	40.73	66.06
polyp at pH7 6	18	18	38.30	57.41
coral polyp · control treatment	16	16	56.72	110.71
coral polyp · oil and dispersant treatment	16	16	62.56	111.96
coral polyp · oil treatment	16	16	52.05	82.62
coral polyp · dispersant treatment	16	16	38.38	93.63
Polyp	10	10	15.38	34.47

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	66.06
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	64.66
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	59.48
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	57.97
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	52.83
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	52.18
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.78
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.39
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.03
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.33
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.15
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.36
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.80
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.92
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.00
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.93
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.50
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.73
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	57.41
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	55.29
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	51.43
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.43
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.91
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.58
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.51
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.11
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.27
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.15
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.70
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.57
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.67
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.21
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.54
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.49
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.70
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.49
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	110.71
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	102.11
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	88.93
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	81.46
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	69.95
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.95
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.49
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.09
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.70
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.18
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.90
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.20
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.11
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.45
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.51
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.81
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	111.96
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	108.52
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	98.57
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	82.53
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	76.45
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	67.99
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	65.49
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	64.27
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	62.04
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	56.91
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.93
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.14
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.78
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.52
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.62
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.19
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	82.62
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	78.08
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	77.77
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	73.76
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	73.74
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	61.31
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	55.81
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.58
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.56
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.58
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.32
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.30
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.63
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.77
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.46
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.60
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	93.63
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	69.95
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	64.38
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	53.45
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.26
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.51
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.44
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.82
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.53
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.66
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.66
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.16
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.73
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.21
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.33
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.40
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	34.47
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	34.27
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	20.22
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	18.48
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	16.90
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	11.44
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	6.93
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.29
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.97
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.81

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.