Gene detail

Detailed information of OS493_040503-T1 in Lophelia pertusa

Genomic Location: scaffold_2377:2767...3126
NR annotation: KAJ7388002.1, Oxidative stress-induced growth inhibitor 2, partial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Y236	Oxidative stress-induced growth inhibitor 2 OS=Homo sapiens OX=9606 GN=OSGIN2 PE=1 SV=1
Q8VC10	Oxidative stress-induced growth inhibitor 1 OS=Mus musculus OX=10090 GN=Osgin1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003640 (this species only) · gene tree & orthology

Pfam domain

No Pfam domain signature was recorded for OS493_040503-T1 in Lophelia pertusa.

InterPro

InterPro term	Type	Description	Source
IPR029731 all species →	Family	OKL38 family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15192 all species →	PROTEIN CBG05349	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for OS493_040503-T1 in Lophelia pertusa.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_040503-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_040503-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

148.9Max TPM

38.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	66.06	148.89
polyp at pH7 6	18	18	54.27	93.89
coral polyp · control treatment	16	16	25.62	40.69
coral polyp · oil and dispersant treatment	16	16	33.91	53.93
coral polyp · oil treatment	16	16	23.96	41.96
coral polyp · dispersant treatment	16	16	19.98	32.27
Polyp	10	10	36.91	60.85

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	148.89
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	140.95
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	81.10
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	79.98
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	78.06
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	76.32
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	75.96
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	74.07
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	54.82
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	53.13
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	52.52
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	50.81
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.42
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.20
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.95
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.12
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.69
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.08
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	93.89
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	93.80
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	88.23
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	87.04
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	63.32
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	55.85
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	55.19
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	54.69
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.23
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	47.06
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.48
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.97
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.31
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.24
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.21
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.31
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.85
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.26
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.69
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.99
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.11
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.03
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.12
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.51
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.29
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.77
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.45
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.30
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.16
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.51
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.20
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.44
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.78
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.57
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	53.93
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.48
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.46
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.30
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.86
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.62
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.65
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.65
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.29
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.90
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.96
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.30
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.14
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.84
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.65
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.49
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.96
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.94
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.96
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.67
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.48
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.46
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.15
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.36
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.07
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.61
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.32
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.91
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.37
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.04
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.60
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.51
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.27
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.65
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.24
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.19
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.88
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.35
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.79
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.63
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.21
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.92
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.86
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.92
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.05
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.99
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.66
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.02
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	60.85
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	49.23
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	48.19
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	43.74
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	42.77
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	34.21
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	29.42
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	24.84
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	20.13
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	15.67

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.