Detailed information of OS493_040594-T1 in Lophelia pertusa

Genomic Location: scaffold_2605:902...5186
NR annotation: KAJ7387985.1, hypothetical protein OS493_040594, partial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q5EE04Nucleoprotein TPR (Fragment) OS=Xenopus laevis OX=8355 GN=tpr PE=1 SV=1
F6ZDS4Nucleoprotein TPR OS=Mus musculus OX=10090 GN=Tpr PE=1 SV=1
F1MA98Nucleoprotein TPR OS=Rattus norvegicus OX=10116 GN=Tpr PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002126 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF09457
all species →		RBD-FIPFIP domain MotifInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR019018
all species →		DomainRab-binding domain FIP-RBDInterproscan
IPR037245
all species →		Homologous_superfamilyFIP-RBD, C-terminal domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR18898
all species →		NUCLEOPROTEIN TPR-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005643
all species →		Cellular Componentnuclear poreInterproscan
GO:0006406
all species →		Biological ProcessmRNA export from nucleusInterproscan
GO:0017056
all species →		Molecular Functionstructural constituent of nuclear poreInterproscan
GO:1901673
all species →		Biological Processregulation of mitotic spindle assemblyInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_040594-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_040594-T1 global co-expression network
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