Gene detail

Detailed information of OS493_040644-T1 in Lophelia pertusa

Genomic Location: scaffold_2690:1481...3426
NR annotation: KAJ7381534.1, hypothetical protein OS493_040644 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A5PJK1	Transmembrane protein with metallophosphoesterase domain OS=Bos taurus OX=9913 GN=TMPPE PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004098 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00149 all species →	Metallophos	Calcineurin-like phosphoesterase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051158 all species →	Family	Metallophosphoesterase superfamily	Interproscan
IPR029052 all species →	Homologous_superfamily	Metallo-dependent phosphatase-like	Interproscan
IPR004843 all species →	Domain	Calcineurin-like phosphoesterase domain, ApaH type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31302 all species →	TRANSMEMBRANE PROTEIN WITH METALLOPHOSPHOESTERASE DOMAIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05569	mnhE, mrpE; multicomponent Na+:H+ antiporter subunit E	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_040644-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

3.6Max TPM

1.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	1.08	1.84
polyp at pH7 6	18	18	1.22	2.38
coral polyp · control treatment	16	16	1.39	3.57
coral polyp · oil and dispersant treatment	16	15	1.08	1.85
coral polyp · oil treatment	16	16	1.42	2.30
coral polyp · dispersant treatment	16	16	0.93	1.59
Polyp	10	10	1.22	1.78

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.84
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.68
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.58
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.49
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.42
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.27
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.24
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.07
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.05
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.92
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.84
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.83
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.82
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.82
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.74
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.69
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.61
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.60
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.38
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.06
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.04
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.56
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.33
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.29
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.27
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.20
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.18
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.13
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.03
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.02
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.96
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.92
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.87
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.70
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.65
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.46
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.57
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.35
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.81
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.77
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.73
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.59
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.39
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.18
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.16
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.10
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.97
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.93
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.85
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.73
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.59
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.51
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.85
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.75
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.71
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.56
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.44
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.40
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.32
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.17
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.07
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.04
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.99
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.74
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.62
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.35
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.33
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.30
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.10
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.80
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.76
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.64
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.60
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.47
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.46
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.43
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.39
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.36
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.32
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.97
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.78
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.76
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.57
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.59
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.47
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.18
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.14
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.14
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.12
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.06
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.99
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.98
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.81
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.81
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.72
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.70
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.60
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.56
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.05
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	1.78
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.57
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.45
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	1.35
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.30
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.19
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	1.16
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.12
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.08
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.20

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.