Gene detail

Detailed information of OS493_040667-T1 in Lophelia pertusa

Genomic Location: scaffold_2761:765...3173
NR annotation: KAJ7387978.1, Peptide-N(4)-(N-acetyl-beta- glucosaminyl)asparagine amidase, partial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9JI78	Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Mus musculus OX=10090 GN=Ngly1 PE=1 SV=2
Q5XI55	Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Rattus norvegicus OX=10116 GN=Ngly1 PE=2 SV=2
Q96IV0	Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Homo sapiens OX=9606 GN=NGLY1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002168 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04721 all species →	PAW	PNGase C-terminal domain, mannose-binding module PAW	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006588 all species →	Domain	Peptide N glycanase, PAW domain	Interproscan
IPR038680 all species →	Homologous_superfamily	PAW domain superfamily	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan

PANTHER

No PANTHER signature was recorded for OS493_040667-T1 in Lophelia pertusa.

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006516 all species →	Biological Process	glycoprotein catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_040667-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_040667-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

93TPM > 0

7Conditions

18.7Max TPM

6.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	15	7.47	11.84
polyp at pH7 6	18	14	6.78	13.92
coral polyp · control treatment	16	16	8.02	18.69
coral polyp · oil and dispersant treatment	16	15	7.82	16.24
coral polyp · oil treatment	16	15	4.32	9.19
coral polyp · dispersant treatment	16	15	6.78	12.12
Polyp	10	3	1.28	5.21

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.84
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.84
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.18
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.91
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.95
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.49
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.39
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.88
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.53
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.36
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.09
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.85
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.21
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.29
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.60
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.92
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.68
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.46
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.35
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.28
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.05
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.32
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.30
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.57
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.52
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.16
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.81
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.53
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.06
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.69
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.34
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.07
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.94
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.35
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.79
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.48
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.16
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.62
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.54
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.11
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.08
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.24
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.79
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.20
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.93
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.24
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.81
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.70
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.44
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.93
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.03
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.67
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.97
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.72
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.25
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.77
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.46
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.44
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.13
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.54
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.19
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.87
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.79
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.35
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.29
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.25
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.63
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.59
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.81
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.84
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.51
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.97
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.40
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.06
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.56
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.12
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.41
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.27
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.41
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.32
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.14
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.83
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.42
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.93
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.74
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.53
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.65
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.97
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.39
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.34
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.21
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.46
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.12
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.