Gene detail

Detailed information of RMX35782.1 in Pocillopora damicornis

Genomic Location: SczhEnG_4358:174...2183
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00025797

ATGGCTCACCTTTTAGCACCAGGCTATAAAGATGTATTCTTGCCAAGTGTTTACGATGCTTTATTACTTACTAGATCCACATGTGATTTTAGAGATGGACGACTCATAACTTCTCCAAATTTTACACAGTATCTCGCTGAGATACCATTTAACGATAGTTATTTATTTGCTATCATGCATCTTATACCTGCAGACTATACAGAAAGATTAGAATCTTTGTCCTCATCGAGGGAAAGGCAAGCCTCTCCCCATACCAAGCACGATCTTATTCTACCCTTAGCTGCATTATTTCTACTAATCAAATCTTATGCTAGTATCCCAACTCTAGAAATAAGTCAACTATGCTACAAAGCTCTATTAAGAACAATAGCCCTTTCTACTACACAATGCCTTAGCACTTGGAGATGTCGTACTTTGTTTTCATTACAACCTGTTATAGTTCCAGTTGGTAGAATAGCTCTTGGTCGTATTTTAAATGTTGTCGGTTCTATAATTGATCCTCATGCCCAAATAAGTCATTCCTACCAATTTACTAGATGTGGACTCATAGATTACAAGTATAGTGGTAAGTATAACTCCACTAAAGCAAAGGCACATAGGCTATCTTTGATAGCCCGAGGTGTGCCCCGATTGGCTATGCTATTTACATCCCATTCAGGATTCATCCCACAGGCATTTAAGTCAGATCTAGCTTACTTAAAAGCACACTTTCCGAAGGCTCTGTGTGCTGCTAGCAGCACATGGATATCTATGATATCCCGAGGTGTGCCCCGATTGGTCTTGCCTCCTTATATATTTTACTTCTACTCTATGATAAGCCTAAACTTAAAAGGTACACATCTTATTCCTTATGCAAATAAGACTACATCAGATACACAATTCTCACAAGTAAAGCCTATTCATAAAACCCCGGATAAGTTAGTAAGACTTAGTACTGATCTAAGATTATTTGAAACAGGTATAAAGGTTGTAGACTTACTAACTCCATATGTACAAGGTGGGAAAATAGGTTTATTTGGAGGTGCAGGCCTTGGTAAGACAGTAGTTATAATGGAGTTAATAAGAAATCTAGCAATAGAGCATGGGGGTCTTTCTATATTTGCTGGTGTTGGTGAAAGAACTCGTGAAGGAAATGATTTATATTATGAAATGCAGGACTCAGGTATTATAGCTCCTTATGCTAATCCTTCCGATTCCATACATATAAGCCAATCGGGGCTCATCTCTCCAGCAAAGGAAGTTTGCACGATAGCCCTTAATGAGAATTCTCTAGTTGCCTTAGTCTTTGGGCAAATGAATGAAACACCTGGAGCAAGAATGAGGGTATGTCATGTTGCATTAGCAATGGCTGAATATTTTAGAGATCTTTCACATCAAGATGTACTTATCTTTATTGATAATGTTTTCAGATTCCTACAAGCTGGTTCAGAAGTAAGTACCTTATTAGGAAGAATGCCCTCAGCAGTTGGATATCAACCAACTCTTTGTACAGAGATGGGGTCTATCCAAGAAAGAATAGTTGCTACTAAGCTAGGATCAATAACTTCTATTCAAGCTGTCTTTATACCTGCAGATGACTTAACAGATCCAGCACCTGCAGTAATCTTCGGCCATTTGGATGCTATAACAGTACTATCTCGAGCTTTAGCAGCTAAAGCTATATACCCTGCTGTAGATCCATTTAATTCCACATCTAAAATGCTTTCACCTTCCCACATCTCACAAGAACATTTGCTAGTAGCAACTTCAGTAAAACAAATCTTACAGCGATATAAAGAACTGCAAGATGTAATTGCTATTCTAGGATTAGAAGAATTGTCCGATCAAGATAGAGTTATAGTTAATAGAGCAAGAAAGATTGAGCGATTCCTCTCCCAAGCATTCTTTGTTGCAGAGATATTTACAAGAATTCAAGGTGCTTATGTCTCTCTAGATGAAACAATATACGGCTTTAGTCAAATTGTTAATGGTCTTTATGATGATTGGTCCGAAGGTTCATTTTATTTAAAA

Transcript

rna-pdam_00025797

ATGGCTCACCTTTTAGCACCAGGCTATAAAGATGTATTCTTGCCAAGTGTTTACGATGCTTTATTACTTACTAGATCCACATGTGATTTTAGAGATGGACGACTCATAACTTCTCCAAATTTTACACAGTATCTCGCTGAGATACCATTTAACGATAGTTATTTATTTGCTATCATGCATCTTATACCTGCAGACTATACAGAAAGATTAGAATCTTTGTCCTCATCGAGGGAAAGGCAAGCCTCTCCCCATACCAAGCACGATCTTATTCTACCCTTAGCTGCATTATTTCTACTAATCAAATCTTATGCTAGTATCCCAACTCTAGAAATAAGTCAACTATGCTACAAAGCTCTATTAAGAACAATAGCCCTTTCTACTACACAATGCCTTAGCACTTGGAGATGTCgtactttgttttcattacaaCCTGTTATAGTTCCAGTTGGTAGAATAGCTCTTGGTCgtattttaaatgttgtcGGTTCTATAATTGATCCTCATGCCCAAATAAGTCATTCCTACCAATTTACTAGATGTGGACTCATAGATTACAAGTATAGTGGTAAGTATAACTCCACTAAAGCAAAGGCACATAGGCTATCTTTGATAGCCCGAGGTGTGCCCCGATTGGCTATGCTATTTACATCCCATTCAGGATTCATCCCACAGGCATTTAAGTCAGATCTAGCTTACTTAAAAGCACACTTTCCGAAGGCTCTGTGTGCTGCTAGCAGCACATGGATATCTATGATATCCCGAGGTGTGCCCCGATTGGTCTTGCCTCCTTATATATTTTACTTCTACTCTATGATAAGCCTAAACTTAAAAGGTACACATCTTATTCCTTATGCAAATAAGACTACATCAGATACACAATTCTCACAAGTAAAGCCTATTCATAAAACCCCGGATAAGTTAGTAAGACTTAGTACTGATCTAAGATTATTTGAAACAGGTATAAAGGTTGTAGACTTACTAACTCCATATGTACAAGGTGGGAAAATAGGTTTATTTGGAGGTGCAGGCCTTGGTAAGACAGTAGTTATAATGGAGTTAATAAGAAATCTAGCAATAGAGCATGGGGGTCTTTCTATATTTGCTGGTGTTGGTGAAAGAACTCgtgaaggaaatgatttaTATTATGAAATGCAGGACTCAGGTATTATAGCTCCTTATGCTAATCCTTCCGATTCCATACATATAAGCCAATCGGGGCTCATCTCTCCAGCAAAGGAAGTTTGCACGATAGCCCTTAATGAGAATTCTCTAGTTGCCTTAGTCTTTGggcaaatgaatgaaacacCTGGAGCAAGAATGAGGGTATGTCATGTTGCATTAGCAATGGCTGAATATTTTAGAGATCTTTCACATCAAGATGTACTTATCTTTATTGATAATGTTTTCAGATTCCTACAAGCTGGTTCAGAAGTAAGTACCTTATTAGGAAGAATGCCCTCAGCAGTTGGATATCAACCAACTCTTTGTACAGAGATGGGGTCTATCCAAGAAAGAATAGTTGCTACTAAGCTAGGATCAATAACTTCTATTCAAGCTGTCTTTATACCTGCAGATGACTTAACAGATCCAGCACCTGCAGTAATCTTCGGCCATTTGGATGCTATAACAGTACTATCTCGAGCTTTAGCAGCTAAAGCTATATACCCTGCTGTAGATCCATTTAATTCCACATCTAAAATGCTTTCACCTTCCCACATCTCACAAGAACATTTGCTAGTAGCAACTTCAgtaaaacaaatcttacaGCGATATAAAGAACTGCAAGATGTAATTGCTATTCTAGGATTAGAAGAATTGTCCGATCAAGATAGAGTTATAGTTAATAGAGCAAGAAAGATTGAGCGATTCCTCTCCCAAGCATTCTTTGTTGCAGAGATATTTACAAGAATTCAAGGTGCTTATGTCTCTCTAGATGAAACAATATACGGCTTTAGTCAAATTGTTAATGGTCTTTATGATGATTGGTCCGAaggttcattttatttaaaa

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q06FV3	ATP synthase subunit beta, chloroplastic OS=Pelargonium hortorum OX=4031 GN=atpB PE=3 SV=1
Q8MBG3	ATP synthase subunit beta, plastid OS=Cuscuta gronovii OX=35886 GN=atpB PE=3 SV=1
Q9TJR9	ATP synthase subunit beta, plastid OS=Prototheca wickerhamii OX=3111 GN=atpB PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00006 all species →	ATP-synt_ab	ATP synthase alpha/beta family, nucleotide-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000194 all species →	Domain	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR024034 all species →	Homologous_superfamily	ATPase, F1/V1 complex, beta/alpha subunit, C-terminal	Interproscan
IPR005722 all species →	Family	ATP synthase, F1 complex, beta subunit	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR050053 all species →	Family	ATPase alpha/beta chains	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15184 all species →	ATP SYNTHASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0015986 all species →	Biological Process	proton motive force-driven ATP synthesis	Interproscan
GO:0045261 all species →	Cellular Component	proton-transporting ATP synthase complex, catalytic core F(1)	Interproscan
GO:0046933 all species →	Molecular Function	proton-transporting ATP synthase activity, rotational mechanism	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02112	ATPF1B, atpD; F-type H+/Na+-transporting ATPase subunit beta	EC:7.1.2.2 EC:7.2.2.1	Photosynthesis proteins	ko00194	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.