Gene detail

Detailed information of RMX36633.1 in Pocillopora damicornis

Genomic Location: SczhEnG_4287:262443...268499
NR annotation: no NCBI-NR hit recorded
Species abbreviation PDAMI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00015016

GGCAAAATGAGGAAATAATAGCTCGCAGTCTAGCTAGTCCACGTGCTGCTAGAGCCAGTTTTCCCCAGTTTTCCCAATAACCAAATGTTGCGCGAGGCTTGGTACTGAAGTCATTGTAAAATGGCGGCCAAGAGTGGAGATGTAATTTTCAGAGTTGGCGAGGCCGACACGTCAGACATCTGGGATGACACCGCACTAATAGAGGCATACGATCGAGCAATAAATGCTATTAAGAATGGAGGGAAGAATGGTGgcacaaaaggaaagaatggTGGTAAAAACAGGAAACAACAGtcctcaaagaaaaaggacaagaagaaaacaacaggGCAGACAATTGAGGCAAGAgttagttttgaaaattattttgtggaTGCTAAGAAAGAAATAtggCATGTTGGTGACAAATGCCGGGCTTTTTACTCTGAAGATGAACAGATTTATAATGCAGTGGTAATCTTGCTTGATGGCAGTTCCAATACTTGTGTAGTCAGGTTTTCTGGCTATGgtaatgaagaagaaaagaacttAGATGATCTTTTGCCACCATCCAAAAGAGATTTTAAGTCTCCCAGACAAAGTGGACATCATTGTGCTCAGCTGGCTTCCCCTGAACAAAATAGTGGTGATAATGAAATGGACTGGAGTACTGGGGGCCAGTCACCCATCAGATGGCAAGTAAGTGACTTGTGTCTAGCACCAGAACAACCAAGTCAGCACCTACATGAAGCAGTTATTAACTCTTTTCCAACACCATACACTTGCAAGGTCACTTTCCTCAGATCCAGACAAAGACAAGATGTGGACCTATCAACACTGAGGCCTTCACACTCGTCGCGCCAAGTACACCCCCACCATCacaatcatcatcatccttaCTTAACTGACCAAAGATACCCTGTGTCAGGAGCCCCATTTACCAGCCATCAGTTTCCTATGAATTTCTTTACACCAtgtcctcctcctcctcctgtTCCCCCTGTGCTCCTTCCTCATCACTGGCCAAATGCAGTTGGATCACAACCCTCAGCACCTACAAACTCCTTTCCACATGCACCTATGCCTCCTCCTCCAGCTCCAGTAAACAGTAGTGATGTTTCTCATGACAATGATGCACTAGCCAGTATGTTAATGGCCTGGTACTTGAGTGGCTATCACACAGGTTATTATCAGGCAATGCAAAATCTGCATCACAGCTCTAACCCTGGATCTAATGAACCTCAAGTATCTACAAGTGATGCTTGTGATGCAGATACTAGTGAACAGACTACAGATGAACTTCCTTTTGGAGCAAAACAGCAGTTGTgacattttattaaattttgtagTTTATTTCTTAGAGTGTATgtttgcaatgaaaaaaattatgaacttgTAACATTTAATCACTAATAAATTTATTAGCTAACTGCTGGGTAAGCtcattatatttcatttttacccACAAATATGGTTAAAAGATAGAGATTGGTTGACAAAGAGAATGTATAAGATAGCTTACAAGCAGGCTTTCTCTGGCTCAGGTAGACAAGCAGCTTTGCCTGATAGATCAGGCCAGCAATCAAAGCAAGTTGGTGAAAGGTGTGCGAAGCTACGTATAAGAATTTTACCTTTACCTGGATTAGAAAAATTGAGTGGAGATGTTGATGATCATTTGTCTACTTGTATATAATGTAGAAATTAGACTTGATTGCTGTTGCATCTTTTTCTACTCTTGAGAGCAGACacctttttcagtttgctgaaaaagttttttgctCTCACAGACAACATCATTCTGCACCTGAAGTTTTTGGTAATTAAATATAAACCGGTGATGATTTCTAGTTTTATATCACTGCTCATTGACTGGCTGTTCATTGGGTGTTAAAGATTGGAAAATTGTCCATCTGCTGCACAAAATTATCtgggtaaattttaattgcataAGCTCCTCCTCATTTAGCAAGGAAGAACATTCACCAGTTGTTTTACAGTATTCtcttacttctttttttcataatgaaaACCCTGACTTCTTGATCTTCTACAGATGTCAGAGTAATGAAGGCCTATAACAGTATTTCTGTGAGTGCTTTGTTATAATCAATCAAGGTTTGAGGATGCCAGTACTGTGGACAAAGCTTTAGCATAAGCTTTCGGGTTTTTATAAAAAACACAGTTGTTAGCACAAGTATCAGGGTTCGTGTCCCAGATTGTTAGCCCGCAGGAACACAAGGGGGGAAGAACAATGTTCCTGCTTTGGGCCTTGTCTCTTAAAACAGCCTGTAAAGCTTCAATGTATCTCTCTGTTTCCCTCtctttttgaagttttttttgtctcctaACCAAatccatttcctttttcttttccttttgagCTTTGAGAAAAGACTCCTCTTCTTTTCTGACTCTTTGCATTTTTAGCTTGTCAACCTCCTGTTGCTCTACCTCAAGGCGttcaacttctttttcaactttcagaGCTTCCATTCTTTTACGATGCTCCCTCATTCGAATGTTTTCCCTCACTTGCTCCCTTTCAATGTCCATAAACAGCCTCCTGTACACAGCAACTTGAGATTTTGCATGTGCCCTCTTTTCCTCCAAAAGCCTAGAGGGCTGTAAGAGCATTTCAACataattgtcttttttcttgacCGATGCATCATCAATCTTTTGAAGCTGGCTTTTCCAGTCCTGGTTTTCAATCTCTGCATTCTCGCCATGTTCAAAGTGAACATGTTTCTCAGGTGATGCCTGGTCTCCACTTACCGGCAGACCTTTCTCTGGAATGAAGTGATCATTGTCCAAACTTTGATCTTGTATGGCATTTTCTCCTATCCAATAATCACCGATTTCTTTTAATGAATCACTactgagaatttgttgttctGAGTTAGAAACTGGCTGCCTGGATAAACCATGATCTTTAGTTGGAGACGTCCGCCACAAGCCTCCAGGAAGGAGTTTACTATAGTGCTCAACTTCTGCTCCAAGACTTTTGGAACTGAGAACCTTCCTCGCATGTTTCGAGCAATTTCTGATCTTTTTCGCATGTTCATCCAATAGCTGACTTGCAGTATCTACTGCTGTGAAATCTCGAGTCACGCTCCTTTGGATTTTGAGCTCAGATTGGTCGCGATAAACACAATTGTCCCGTCTGATAGTACTTGGTAAGGAACTTTGGCGCACAACATTGCGCTCCACTTCAAAAGCCTCCATCGACATGCCATGTTGCTCCTCTCGTTTCATATGCTCAATATTTCTGACTCTCGCTTTTACCACCTGTTGGAATTCTTTGagcctttcttctttttcttgtataaCTTTTCTGAGTCGGAGTTCTTCTTCACGGGCTCCAAGTGAGCTTCCATGAGTTGGTCCACGATGCGGTTCTACCCAAGCCGAAAATGGCAAGATTGCAGAAGATCGATGTTCAAGTTGTCCCTTCGATCGCGTTTTCTGCGGcagctttttctttgcttgcaGGTTCGCTCTTATTGGATTGTTTTGAGGCACTCTAAACTCGATAGAAGCTGCCATGTTCATACCGC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P97801	Survival motor neuron protein OS=Mus musculus OX=10090 GN=Smn1 PE=1 SV=1
O18870	Survival motor neuron protein OS=Bos taurus OX=9913 GN=SMN1 PE=2 SV=2
O35876	Survival motor neuron protein OS=Rattus norvegicus OX=10116 GN=Smn1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20636 all species →	SMN_G2-BD	Survival Motor Neuron, Gemin2-binding domain	Domain	Interproscan
PF20635 all species →	SMN_YG-box	Survival Motor Neuron, YG-box	Domain	Interproscan
PF06003 all species →	SMN_Tudor	Survival motor neuron protein (SMN), Tudor domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002999 all species →	Domain	Tudor domain	Interproscan
IPR047298 all species →	Domain	Survival motor neuron protein, Tudor domain, eumetazoa	Interproscan
IPR040424 all species →	Family	SMN complex subunit Smn1	Interproscan
IPR047313 all species →	Domain	Survival motor neuron protein, C-terminal oligomerization domain	Interproscan
IPR010304 all species →	Domain	Survival motor neuron, Tudor domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR39267 all species →	SURVIVAL MOTOR NEURON-LIKE PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006397 all species →	Biological Process	mRNA processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13129	SMN; survival motor neuron protein	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.