Gene detail

Detailed information of RMX36705.1 in Pocillopora damicornis

Genomic Location: SczhEnG_4273:54760...62015
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00015821

gttcttttaCATTAGCTTTCCCAAATATGGCGACTTGTGGAAATTGCGCCAGCgtgatttttgaaaacatagtCCACCATCACTTCTAAGTTTCGTCCTTGCGTAAGATCTAACTTTCTGGTCAATTTACTTGAAGTTTTAAAGTATTGTATAGGAGGTCAAGCGTAAACATTTGGGTATATCGAGTTTGATGATGTCGGAGTCCGCTTCACCAGAAACAGGAGACTTGGTAGATTTTTCATCAGGCATGGAGGATCAGGAGGATGTCTCCTCGACTACACCATCTTTGGATGACATTGTAAAAGACGAACCATTGCCAGAAGGTGAAAACGTGCCtgatgaaagagaagaaacGTCGGCTGTCGAAGATCTAGTATCAGAGCAAGTAGAATCGGAAGAAAAACCAGAAGAACCAGCCACGAAAGAGCTGACAAGTTGGCCGGCGGTATGGATGAAACAAAACGGCGTGGATCAACGAGtAATTGATCTGATCTACTGGCGGTGTCtgaagaaaacaggaatagtGGTTGCCATTGAACTGGTTTTGTTGTTCTCTTTGACCACATATACATTCCTCAGTGTTGTGACCTTCTTCTCCATGGCGCTGTTAACAGTGTCGCTGCTTTATAGGGTTGGCATGACTGTTATGGGTGCTATCCAGAAAAGCGGCACTGAGAATCCCTTCAAAACTGTTCTTGAGAGAGACGTGGATATCCccaaagaaaagGCTGTGGAGTTTGTAGAGGCCAGTATTGATCATATCAACTGTTATTCCAAGGAACTGAGGCGACTCTTCCTAGTAGAGGATATTGTTGACTCCATCAAGTTTGGACTTTTGTTGTGGGTTTTATCCTATGTTGGAGCTTGGTTCAGTGCCTTAACTCTCATCATTATCGGTGTTATTGTCCTATTCTCTGTGCCTCGCTTGTATGAAGATCATCAGGATAAGGTTGATGAGTACGTCCAATTGGCTCGAAAGAAAGTTGGAAGCCTCATTGAACAGGCAAAGTCCAAGCTGCCTGCTAAACTGCAAAAGCAGAAAGCTTCATAAACACCAAAACTCCAGTTCATGGAATTCAAATGATTCCAAAATGAGATCTGATTTTCAAGTGTAATTCTCCCAATTGCCTGCCTTGCTCCTTAATTTGTGTGGATTTTACATGAATGTCAGAGAAAGTTGAAATCTGTTGGAATTTTGTTTGACACTCTTTACTACAGCATTGGTAGCAGtcgttggttttctttttatggaAATGGCTTCACTGAAGAGGTACTGAGTTGAAGACCCAGCCATGGtgtgaaattttccttgaaagcTTCTTTGTCTCAACTGCTGTGGTTTAAGCTCTATGAGGTGTTTCCTATGAAGCTTGGCCATTCCCTTCAGAACAGAacattaaataattataattttgagGACATGTAATAAGGGTTCTTTGTCTGTGAATGACActtgtttaaaatgattgcAGTAATGAAGTAGATAGCATTTTGCAGAGGttggtttttgaaaattgatgttaTTTATAGATTTTCTTGACAGTGCAGAATTGTTCATGCAGATTTCATCTACTATGTCTGTTGAAACTACAGATATTAAAGGTTTCATTTGGGTTGGTTGAATGAGGAAAAGTGTTAAAACCTTTTTGTCAGGTTTGTGGGTATTTTGCAGAGATGAATTCTCGTTATGTAGTCTGTTCTCTGAAGGAGTGTGTCCACTGTTGATAAATCTGTTAATATTGAAATTTGTGATGGCTGTAGTTTGCACCTGGAGTCCCAAGATCACAAGTTTGCTGAATGGGATCAGTTTCATCATgtgttaaaatgaaataagctgTTTAACTGTAATACACATTTGGGAAGTGGGATGGTAGGGTAACTGTCAACAAGACTGAACTAGAGCAATGGTATTTAAtccaaactttttctttgtgttccTCAGAAGGCAGgctttgttgtttgttgtggTGATATTCTGCAAGTTTTGTGTCTGATCTTCGAAGTTGAAATCTAACTAACTCAGCAAATTTACTTGTTTgcctctttgaaaataaacttgctTAAGTTGATGGGAgcactaaaaatttttaggttttgtttggtttttcgGAAATTAGTAATCTATGtcatttaaaataactatTGTGATATGATCTGTATGAGACTGAATTTACACTCGCTGTATAAAGGTTCAATAAGCCAAACGTGTATATTAGAGAGAGAGACGTAATCTGTACCTGCTTTTCAGCAATACTCAGTTGTATCGCAAGAGCTGTAGGTCTTTCGGCCAGCAATCTCACCCAGCCGTCGAAGGTGTGAGTACGAAGTTAGTGCGCTGGCCGAAACGATCACGGCTCACGGAACGCTATTCGTAGATTGAGACCTTGTAAGTTGCCATATAtgcagtaataaaaaaaaagtcgaacATCGCAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9NQC3	Reticulon-4 OS=Homo sapiens OX=9606 GN=RTN4 PE=1 SV=2
Q99P72	Reticulon-4 OS=Mus musculus OX=10090 GN=Rtn4 PE=1 SV=2
Q9JK11	Reticulon-4 OS=Rattus norvegicus OX=10116 GN=Rtn4 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02453 all species →	Reticulon	Reticulon	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003388 all species →	Domain	Reticulon	Interproscan
IPR046964 all species →	Family	Reticulon 1-4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45799 all species →	RETICULON-LIKE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005789 all species →	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0030424 all species →	Cellular Component	axon	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20721	RTN1; reticulon-1	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.